Variant report

Variant	rs904818
Chromosome Location	chr16:48622582-48622583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 130 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs1039340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039341	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039343	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039344	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1106386	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11076570	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11076571	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11076572	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11076573	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1115758	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1115759	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1120275	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1120276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11640463	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11641458	1.00[CEU][hapmap];0.92[CHB][hapmap];0.80[YRI][hapmap];0.82[EUR][1000 genomes]
rs11641510	0.87[ASN][1000 genomes]
rs11643264	0.84[EUR][1000 genomes]
rs11643272	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11644518	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11645193	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11647046	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11647048	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11649236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11859909	0.82[EUR][1000 genomes]
rs1224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12446280	0.87[EUR][1000 genomes]
rs12935540	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13331902	0.87[EUR][1000 genomes]
rs13335847	0.82[EUR][1000 genomes]
rs1386040	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1386042	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1486411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1486412	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.89[EUR][1000 genomes]
rs1564979	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes]
rs16946340	0.92[CHB][hapmap]
rs16946342	0.81[EUR][1000 genomes]
rs17826468	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1825683	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1872652	0.88[EUR][1000 genomes]
rs1872654	1.00[CEU][hapmap];0.92[CHB][hapmap];0.80[YRI][hapmap];0.81[EUR][1000 genomes]
rs1872655	1.00[CEU][hapmap];0.92[CHB][hapmap];0.80[YRI][hapmap];0.82[EUR][1000 genomes]
rs1909765	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1987061	0.89[EUR][1000 genomes]
rs2101372	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2129243	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2354578	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2354579	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28577888	0.82[EUR][1000 genomes]
rs2883475	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs34813315	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36077931	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3743779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3743780	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3817029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3826174	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3843724	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3848319	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3848320	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3848321	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3848322	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4785247	0.81[EUR][1000 genomes]
rs4785248	0.81[EUR][1000 genomes]
rs4785523	0.81[JPT][hapmap]
rs4785528	0.80[EUR][1000 genomes]
rs55671623	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55782524	0.84[EUR][1000 genomes]
rs6500395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6500396	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6500397	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6500398	0.89[EUR][1000 genomes]
rs7184070	0.81[EUR][1000 genomes]
rs7184144	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7187513	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7188741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7191028	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7191225	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7192297	0.81[EUR][1000 genomes]
rs7194570	0.81[EUR][1000 genomes]
rs7196823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7197732	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7198145	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7198773	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7199625	0.89[EUR][1000 genomes]
rs7201196	0.81[EUR][1000 genomes]
rs8044519	0.82[EUR][1000 genomes]
rs8052640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8053598	0.82[EUR][1000 genomes]
rs8057165	0.82[EUR][1000 genomes]
rs8057777	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8058362	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8059819	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs8059905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs868792	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs871902	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs924476	0.84[EUR][1000 genomes]
rs989070	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9921737	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9921741	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9922356	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes]
rs9922734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9923371	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9923753	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9924078	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs9924483	0.89[EUR][1000 genomes]
rs9925406	0.82[EUR][1000 genomes]
rs9927888	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9928051	0.85[EUR][1000 genomes]
rs9930199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9931123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9931737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9933187	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9933329	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9933976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9934626	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9936004	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9936271	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9936445	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9936446	0.89[EUR][1000 genomes]
rs9936454	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9937134	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9937568	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9937610	0.82[EUR][1000 genomes]
rs9937623	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9938126	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9938308	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9938890	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9939103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9941275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9941336	0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs904818	N4BP1	cis	multi-tissue	Pritchard

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48595200-48624000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr16:48596000-48624400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr16:48596800-48624400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr16:48605000-48630200	Weak transcription	Spleen	Spleen
5	chr16:48609800-48624200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr16:48609800-48624200	Weak transcription	Fetal Thymus	thymus
7	chr16:48609800-48624400	Weak transcription	Thymus	Thymus
8	chr16:48611000-48624400	Weak transcription	Psoas Muscle	Psoas
9	chr16:48611000-48624400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr16:48611800-48626000	Weak transcription	Aorta	Aorta
11	chr16:48612200-48624200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr16:48612400-48624400	Weak transcription	Esophagus	oesophagus
13	chr16:48612400-48630200	Weak transcription	Gastric	stomach
14	chr16:48615200-48624400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr16:48615600-48622600	Weak transcription	HUVEC	blood vessel
16	chr16:48615600-48624400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr16:48615600-48624400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr16:48616400-48624400	Weak transcription	HepG2	liver
19	chr16:48616600-48624400	Weak transcription	Primary B cells from cord blood	blood
20	chr16:48617000-48624200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr16:48618000-48623400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr16:48618000-48624200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr16:48618000-48624400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr16:48618000-48625000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr16:48618000-48631600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr16:48618200-48622600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr16:48618200-48624000	Weak transcription	Right Atrium	heart
28	chr16:48618200-48624200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr16:48618200-48624400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr16:48618200-48626000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr16:48618200-48630400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr16:48618200-48640400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr16:48618600-48624400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr16:48618600-48624400	Weak transcription	HSMM	muscle
35	chr16:48618800-48625800	Weak transcription	Brain Anterior Caudate	brain
36	chr16:48619000-48624400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr16:48619000-48624400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr16:48619000-48626800	Weak transcription	Osteobl	bone
39	chr16:48619200-48631800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr16:48620000-48622800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr16:48620200-48624000	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr16:48620200-48624400	Weak transcription	Lung	lung
43	chr16:48620200-48625400	Weak transcription	HMEC	breast
44	chr16:48620400-48623200	Weak transcription	Primary T cells from cord blood	blood
45	chr16:48620400-48623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr16:48620400-48623600	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr16:48620400-48625800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr16:48620600-48624600	Weak transcription	NHEK	skin
49	chr16:48620800-48624400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr16:48621000-48622800	Enhancers	Left Ventricle	heart

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