Variant report

Variant	rs1825683
Chromosome Location	chr16:48630700-48630701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:48630551..48632810-chr16:48645142..48647127,2	MCF-7	breast:
2	chr16:48626790..48629783-chr16:48630060..48632935,2	K562	blood:
3	chr16:48630158..48633718-chr16:48642576..48646074,3	K562	blood:
4	chr16:48629980..48631677-chr16:48642688..48644253,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102921	Chromatin interaction

Extended variants
information (count: 163 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:163)

rs_ID	r²[population]
rs1039340	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1039341	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1039342	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1039343	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1039344	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1106386	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11076570	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11076571	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11076572	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11076573	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11076578	0.83[EUR][1000 genomes]
rs1115758	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1115759	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1120275	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1120276	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11495819	0.84[EUR][1000 genomes]
rs11640119	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11640463	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11641458	0.89[EUR][1000 genomes]
rs11641510	0.98[ASN][1000 genomes]
rs11643264	0.87[EUR][1000 genomes]
rs11643272	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11644518	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11645193	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11647046	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11647048	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11648101	0.82[EUR][1000 genomes]
rs11649236	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11859909	0.90[EUR][1000 genomes]
rs1224	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12444902	0.85[ASN][1000 genomes]
rs12446280	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12597928	0.83[EUR][1000 genomes]
rs12598514	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12933948	0.84[EUR][1000 genomes]
rs12935540	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13330784	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13331298	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13331902	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13332125	0.87[ASN][1000 genomes]
rs13335847	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1386040	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1386042	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1477134	0.83[EUR][1000 genomes]
rs1486411	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1486412	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1558815	0.81[EUR][1000 genomes]
rs1564979	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1564980	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16946342	0.90[EUR][1000 genomes]
rs17826468	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1872652	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1872654	0.88[EUR][1000 genomes]
rs1872655	0.89[EUR][1000 genomes]
rs1909765	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1987061	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2041921	0.83[EUR][1000 genomes]
rs2080507	0.83[EUR][1000 genomes]
rs2080508	0.84[EUR][1000 genomes]
rs2101372	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2129243	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2354578	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2354579	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28432694	0.85[ASN][1000 genomes]
rs28481630	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28577888	0.86[EUR][1000 genomes]
rs28692806	0.81[EUR][1000 genomes]
rs2883475	0.88[EUR][1000 genomes]
rs2883641	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34813315	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36077931	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3743779	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3743780	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3817029	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3826174	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3843724	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3848319	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3848320	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3848321	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3848322	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4277341	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4471681	0.85[ASN][1000 genomes]
rs4493038	0.86[EUR][1000 genomes]
rs4785247	0.85[EUR][1000 genomes]
rs4785248	0.85[EUR][1000 genomes]
rs4785528	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55671623	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55782524	0.87[EUR][1000 genomes]
rs57903644	0.84[ASN][1000 genomes]
rs61098261	0.82[ASN][1000 genomes]
rs6500395	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6500396	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6500397	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6500398	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6500405	0.84[EUR][1000 genomes]
rs7184070	0.88[EUR][1000 genomes]
rs7184144	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7185541	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7185899	0.81[EUR][1000 genomes]
rs7187513	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7188741	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7191028	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7191225	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7192297	0.88[EUR][1000 genomes]
rs7194570	0.88[EUR][1000 genomes]
rs7195684	0.83[EUR][1000 genomes]
rs7196823	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7197732	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7198145	0.85[ASN][1000 genomes]
rs7198773	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7199206	0.84[EUR][1000 genomes]
rs7199625	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7201196	0.88[EUR][1000 genomes]
rs7204345	0.85[ASN][1000 genomes]
rs74017013	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8044519	0.90[EUR][1000 genomes]
rs8050844	0.85[ASN][1000 genomes]
rs8052073	0.86[EUR][1000 genomes]
rs8052640	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8053598	0.90[EUR][1000 genomes]
rs8057165	0.81[EUR][1000 genomes]
rs8057777	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8058362	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8059819	0.86[EUR][1000 genomes]
rs8059905	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs868792	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs871902	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs924476	0.88[EUR][1000 genomes]
rs989070	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9921737	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9921741	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9922356	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9922734	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9923371	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9923753	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9924078	0.88[EUR][1000 genomes]
rs9924483	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9925406	0.89[EUR][1000 genomes]
rs9927888	0.86[EUR][1000 genomes]
rs9928051	0.88[EUR][1000 genomes]
rs9930199	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9931123	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9931737	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9933187	0.87[EUR][1000 genomes]
rs9933329	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9933976	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9934626	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9934844	0.87[EUR][1000 genomes]
rs9936004	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9936271	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9936445	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9936446	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9936454	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9937134	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9937568	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9937610	0.89[EUR][1000 genomes]
rs9937623	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9938126	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9938308	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9938890	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9939103	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9941275	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9941336	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48618000-48631600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr16:48618200-48640400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr16:48619200-48631800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr16:48621200-48631400	Weak transcription	Brain Angular Gyrus	brain
5	chr16:48622400-48632800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr16:48622600-48632600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr16:48624400-48632200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr16:48625200-48631400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr16:48626400-48631600	Weak transcription	Hela-S3	cervix
10	chr16:48626400-48640400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr16:48627200-48631600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr16:48627200-48631600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr16:48627200-48631600	Weak transcription	Osteobl	bone
14	chr16:48627400-48630800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr16:48627400-48631200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr16:48627400-48631400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr16:48628400-48631400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr16:48628400-48637000	Weak transcription	HepG2	liver
19	chr16:48628400-48639800	Weak transcription	A549	lung
20	chr16:48628600-48637000	Weak transcription	Fetal Lung	lung
21	chr16:48628600-48637400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr16:48628800-48631600	Weak transcription	Placenta	Placenta
23	chr16:48629200-48636200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr16:48629600-48630800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr16:48629600-48630800	Enhancers	Placenta Amnion	Placenta Amnion
26	chr16:48629600-48631000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr16:48629600-48631400	Enhancers	GM12878-XiMat	blood
28	chr16:48629600-48631800	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr16:48629600-48632000	Enhancers	Ovary	ovary
30	chr16:48629600-48632200	Enhancers	Stomach Mucosa	stomach
31	chr16:48629600-48632600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr16:48629600-48633200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr16:48629600-48633400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr16:48629600-48633800	Enhancers	Psoas Muscle	Psoas
35	chr16:48629600-48634200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr16:48629800-48631600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr16:48629800-48632800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr16:48629800-48633400	Enhancers	Liver	Liver
39	chr16:48629800-48634400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr16:48629800-48634400	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr16:48629800-48639800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr16:48629800-48640000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr16:48629800-48641800	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr16:48630000-48630800	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr16:48630000-48631200	Enhancers	Brain Hippocampus Middle	brain
46	chr16:48630000-48633400	Enhancers	Fetal Heart	heart
47	chr16:48630000-48638600	Enhancers	Primary T cells from cord blood	blood
48	chr16:48630000-48641200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr16:48630000-48641600	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr16:48630200-48630800	Enhancers	Rectal Mucosa Donor 29	rectum

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