Variant report

Variant	rs61098261
Chromosome Location	chr16:48665448-48665449
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs1039340	0.81[ASN][1000 genomes]
rs1039341	0.81[ASN][1000 genomes]
rs1039342	0.81[ASN][1000 genomes]
rs1039343	0.81[ASN][1000 genomes]
rs1039344	0.81[ASN][1000 genomes]
rs11076570	0.83[ASN][1000 genomes]
rs11076571	0.83[ASN][1000 genomes]
rs11076572	0.83[ASN][1000 genomes]
rs11076573	0.83[ASN][1000 genomes]
rs1115758	0.83[ASN][1000 genomes]
rs1115759	0.83[ASN][1000 genomes]
rs1120275	0.83[ASN][1000 genomes]
rs1120276	0.83[ASN][1000 genomes]
rs11640119	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11640463	0.93[ASN][1000 genomes]
rs11641510	0.82[ASN][1000 genomes]
rs11643272	0.91[ASN][1000 genomes]
rs11644518	0.82[ASN][1000 genomes]
rs11645193	0.81[ASN][1000 genomes]
rs11647046	0.82[ASN][1000 genomes]
rs11647048	0.83[ASN][1000 genomes]
rs11648101	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11649236	0.83[ASN][1000 genomes]
rs11859909	0.81[AMR][1000 genomes]
rs1224	0.81[ASN][1000 genomes]
rs12444902	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12446280	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12933948	0.83[AMR][1000 genomes]
rs13330784	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13331298	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13331902	0.93[ASN][1000 genomes]
rs13332125	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13335847	0.82[ASN][1000 genomes]
rs1386040	0.83[ASN][1000 genomes]
rs1386042	0.83[ASN][1000 genomes]
rs1477134	0.81[AMR][1000 genomes]
rs1486411	0.81[ASN][1000 genomes]
rs1486412	0.93[ASN][1000 genomes]
rs1564979	0.93[ASN][1000 genomes]
rs16946340	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17826468	0.81[ASN][1000 genomes]
rs1825683	0.82[ASN][1000 genomes]
rs1872652	0.93[ASN][1000 genomes]
rs1872654	0.81[AMR][1000 genomes]
rs1872655	0.81[AMR][1000 genomes]
rs1909765	0.83[ASN][1000 genomes]
rs1968903	0.81[ASN][1000 genomes]
rs1987061	0.91[ASN][1000 genomes]
rs2080507	0.81[AMR][1000 genomes]
rs2101372	0.82[ASN][1000 genomes]
rs2129243	0.93[ASN][1000 genomes]
rs2354578	0.81[ASN][1000 genomes]
rs2354579	0.83[ASN][1000 genomes]
rs28432694	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28481630	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2883641	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36077931	0.81[ASN][1000 genomes]
rs3743779	0.81[ASN][1000 genomes]
rs3743780	0.93[ASN][1000 genomes]
rs3817029	0.81[ASN][1000 genomes]
rs3826174	0.81[ASN][1000 genomes]
rs3843724	0.83[ASN][1000 genomes]
rs3848319	0.83[ASN][1000 genomes]
rs3848320	0.80[ASN][1000 genomes]
rs3848322	0.83[ASN][1000 genomes]
rs4277341	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4471681	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4493038	0.81[AMR][1000 genomes]
rs4785248	0.81[AMR][1000 genomes]
rs55671623	0.83[ASN][1000 genomes]
rs57903644	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6500395	0.83[ASN][1000 genomes]
rs6500397	0.93[ASN][1000 genomes]
rs6500398	0.93[ASN][1000 genomes]
rs7184070	0.81[AMR][1000 genomes]
rs7184144	0.80[ASN][1000 genomes]
rs7185541	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7187513	0.81[ASN][1000 genomes]
rs7188741	0.83[ASN][1000 genomes]
rs7191028	0.83[ASN][1000 genomes]
rs7191225	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7192297	0.81[AMR][1000 genomes]
rs7194570	0.81[AMR][1000 genomes]
rs7196823	0.81[ASN][1000 genomes]
rs7197732	0.81[ASN][1000 genomes]
rs7198145	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7198773	0.80[ASN][1000 genomes]
rs7199206	0.81[AMR][1000 genomes]
rs7199625	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7201196	0.81[AMR][1000 genomes]
rs7204345	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74017013	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8044519	0.81[AMR][1000 genomes]
rs8050844	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8052640	0.83[ASN][1000 genomes]
rs8057777	0.81[ASN][1000 genomes]
rs8058362	0.91[ASN][1000 genomes]
rs8059905	0.83[ASN][1000 genomes]
rs868792	0.91[ASN][1000 genomes]
rs871902	0.81[ASN][1000 genomes]
rs989070	0.83[ASN][1000 genomes]
rs9921737	0.81[ASN][1000 genomes]
rs9921741	0.81[ASN][1000 genomes]
rs9922356	0.91[ASN][1000 genomes]
rs9922734	0.83[ASN][1000 genomes]
rs9923371	0.83[ASN][1000 genomes]
rs9923753	0.82[ASN][1000 genomes]
rs9924483	0.93[ASN][1000 genomes]
rs9930199	0.81[ASN][1000 genomes]
rs9931123	0.83[ASN][1000 genomes]
rs9931737	0.81[ASN][1000 genomes]
rs9933329	0.89[ASN][1000 genomes]
rs9933976	0.81[ASN][1000 genomes]
rs9934626	0.83[ASN][1000 genomes]
rs9934844	0.87[AMR][1000 genomes]
rs9936004	0.81[ASN][1000 genomes]
rs9936271	0.83[ASN][1000 genomes]
rs9936445	0.83[ASN][1000 genomes]
rs9936446	0.93[ASN][1000 genomes]
rs9937134	0.81[ASN][1000 genomes]
rs9937568	0.83[ASN][1000 genomes]
rs9937610	0.81[AMR][1000 genomes]
rs9937623	0.81[ASN][1000 genomes]
rs9938126	0.81[ASN][1000 genomes]
rs9938308	0.81[ASN][1000 genomes]
rs9938890	0.83[ASN][1000 genomes]
rs9939103	0.81[ASN][1000 genomes]
rs9941275	0.81[ASN][1000 genomes]
rs9941336	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385210	chr16:48664601-48666699	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48658000-48667200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr16:48658000-48670400	Weak transcription	Pancreas	Pancrea
3	chr16:48662800-48667400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr16:48663000-48666400	Weak transcription	Fetal Intestine Small	intestine
5	chr16:48664000-48674000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr16:48664400-48665800	Weak transcription	Fetal Intestine Large	intestine
7	chr16:48664400-48666400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr16:48664600-48666200	Weak transcription	A549	lung
9	chr16:48664800-48665800	Weak transcription	Liver	Liver
10	chr16:48664800-48665800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr16:48664800-48665800	Weak transcription	HepG2	liver
12	chr16:48664800-48666200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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