Variant report

Variant	rs28432694
Chromosome Location	chr16:48666310-48666311
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HDAC2	chr16:48666236-48666596	HepG2	liver:	n/a	n/a
2	BHLHE40	chr16:48666299-48666661	HepG2	liver:	n/a	n/a
3	NR3C1	chr16:48666254-48666579	A549	lung:	n/a	n/a
4	CTCF	chr16:48666300-48666450	HUVEC	blood vessel:	n/a	n/a
5	MAZ	chr16:48666262-48666580	HepG2	liver:	n/a	n/a
6	CTCF	chr16:48666300-48666450	GM12871	blood:	n/a	n/a
7	USF1	chr16:48666230-48666660	A549	lung:	n/a	n/a
8	TEAD4	chr16:48666023-48666597	HepG2	liver:	n/a	n/a
9	MXI1	chr16:48666269-48666699	HepG2	liver:	n/a	n/a
10	RCOR1	chr16:48666281-48666588	HepG2	liver:	n/a	n/a
11	SP1	chr16:48666188-48666627	HepG2	liver:	n/a	n/a
12	NR3C1	chr16:48666155-48666711	A549	lung:	n/a	n/a
13	CTCF	chr16:48666300-48666450	GM12868	blood:	n/a	n/a
14	MAX	chr16:48666240-48666742	A549	lung:	n/a	chr16:48666615-48666625
15	NR3C1	chr16:48666113-48666659	A549	lung:	n/a	n/a
16	ZNF384	chr16:48666231-48666531	GM12878	blood:	n/a	n/a
17	FOSL2	chr16:48666231-48666629	HepG2	liver:	n/a	n/a
18	MAX	chr16:48666204-48666795	HepG2	liver:	n/a	chr16:48666615-48666625
19	MAX	chr16:48666140-48666825	HepG2	liver:	n/a	chr16:48666615-48666625

Variant related genes	Relation type
ENSG00000260052	TF binding region

Extended variants
information (count: 154 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:153)

rs_ID	r²[population]
rs1039340	0.84[ASN][1000 genomes]
rs1039341	0.84[ASN][1000 genomes]
rs1039342	0.84[ASN][1000 genomes]
rs1039343	0.84[ASN][1000 genomes]
rs1039344	0.84[ASN][1000 genomes]
rs1106386	0.81[ASN][1000 genomes]
rs11076570	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11076571	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11076572	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11076573	0.86[ASN][1000 genomes]
rs11076578	0.84[AMR][1000 genomes]
rs1115758	0.86[ASN][1000 genomes]
rs1115759	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1120275	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1120276	0.86[ASN][1000 genomes]
rs11495819	0.87[AMR][1000 genomes]
rs11640119	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11640463	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11641458	0.87[AMR][1000 genomes]
rs11641510	0.85[ASN][1000 genomes]
rs11643272	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11644518	0.85[ASN][1000 genomes]
rs11645193	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11647046	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11647048	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11648101	0.86[AMR][1000 genomes]
rs11649236	0.86[ASN][1000 genomes]
rs11859909	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1224	0.84[ASN][1000 genomes]
rs12444902	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12446280	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12597928	0.83[AMR][1000 genomes]
rs12598514	0.85[AMR][1000 genomes]
rs12933948	0.90[AMR][1000 genomes]
rs12935540	0.81[ASN][1000 genomes]
rs13330784	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13331298	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13331902	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13332125	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13335847	0.85[ASN][1000 genomes]
rs1386040	0.86[ASN][1000 genomes]
rs1386042	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1477134	0.88[AMR][1000 genomes]
rs1486411	0.84[ASN][1000 genomes]
rs1486412	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1558815	0.82[AMR][1000 genomes]
rs1564979	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1564980	0.83[AMR][1000 genomes]
rs16946340	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16946342	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17826468	0.84[ASN][1000 genomes]
rs1825683	0.85[ASN][1000 genomes]
rs1872652	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1872654	0.88[AMR][1000 genomes]
rs1872655	0.88[AMR][1000 genomes]
rs1909765	0.86[ASN][1000 genomes]
rs1968903	0.83[ASN][1000 genomes]
rs1987061	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2041921	0.86[AMR][1000 genomes]
rs2080507	0.88[AMR][1000 genomes]
rs2080508	0.87[AMR][1000 genomes]
rs2101372	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2129243	0.96[ASN][1000 genomes]
rs2354578	0.84[ASN][1000 genomes]
rs2354579	0.86[ASN][1000 genomes]
rs28481630	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28577888	0.87[AMR][1000 genomes]
rs2883641	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36077931	0.84[ASN][1000 genomes]
rs3743779	0.84[ASN][1000 genomes]
rs3743780	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3817029	0.84[ASN][1000 genomes]
rs3826174	0.84[ASN][1000 genomes]
rs3843724	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3848319	0.86[ASN][1000 genomes]
rs3848320	0.83[ASN][1000 genomes]
rs3848321	0.82[ASN][1000 genomes]
rs3848322	0.86[ASN][1000 genomes]
rs4277341	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4471681	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4493038	0.88[AMR][1000 genomes]
rs4785247	0.87[AMR][1000 genomes]
rs4785248	0.88[AMR][1000 genomes]
rs4785528	0.85[AMR][1000 genomes]
rs55671623	0.86[ASN][1000 genomes]
rs57903644	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61098261	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6500395	0.86[ASN][1000 genomes]
rs6500396	0.82[ASN][1000 genomes]
rs6500397	0.96[ASN][1000 genomes]
rs6500398	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6500405	0.86[AMR][1000 genomes]
rs7184070	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7184144	0.83[ASN][1000 genomes]
rs7185541	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185899	0.84[AMR][1000 genomes]
rs7187513	0.84[ASN][1000 genomes]
rs7188741	0.86[ASN][1000 genomes]
rs7191028	0.86[ASN][1000 genomes]
rs7191225	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7192297	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7194570	0.88[AMR][1000 genomes]
rs7195684	0.86[AMR][1000 genomes]
rs7196823	0.84[ASN][1000 genomes]
rs7197732	0.84[ASN][1000 genomes]
rs7198145	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7198773	0.83[ASN][1000 genomes]
rs7199206	0.88[AMR][1000 genomes]
rs7199625	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7201196	0.88[AMR][1000 genomes]
rs7204345	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74017013	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8044519	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8050844	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8052073	0.86[AMR][1000 genomes]
rs8052640	0.86[ASN][1000 genomes]
rs8053598	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8057777	0.84[ASN][1000 genomes]
rs8058362	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8059819	0.87[AMR][1000 genomes]
rs8059905	0.86[ASN][1000 genomes]
rs868792	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs871902	0.84[ASN][1000 genomes]
rs989070	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9921737	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9921741	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9922356	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9922734	0.86[ASN][1000 genomes]
rs9923371	0.86[ASN][1000 genomes]
rs9923753	0.85[ASN][1000 genomes]
rs9924483	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9925406	0.87[AMR][1000 genomes]
rs9930199	0.84[ASN][1000 genomes]
rs9931123	0.86[ASN][1000 genomes]
rs9931737	0.84[ASN][1000 genomes]
rs9933329	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9933976	0.84[ASN][1000 genomes]
rs9934626	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9934844	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9936004	0.84[ASN][1000 genomes]
rs9936271	0.86[ASN][1000 genomes]
rs9936445	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9936446	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9937134	0.84[ASN][1000 genomes]
rs9937568	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9937610	0.88[AMR][1000 genomes]
rs9937623	0.84[ASN][1000 genomes]
rs9938126	0.84[ASN][1000 genomes]
rs9938308	0.84[ASN][1000 genomes]
rs9938890	0.86[ASN][1000 genomes]
rs9939103	0.84[ASN][1000 genomes]
rs9941275	0.84[ASN][1000 genomes]
rs9941336	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385210	chr16:48664601-48666699	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28432694	N4BP1	cis	multi-tissue	Pritchard

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48658000-48667200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr16:48658000-48670400	Weak transcription	Pancreas	Pancrea
3	chr16:48662800-48667400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr16:48663000-48666400	Weak transcription	Fetal Intestine Small	intestine
5	chr16:48664000-48674000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr16:48664400-48666400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr16:48665800-48666600	Enhancers	Duodenum Mucosa	Duodenum
8	chr16:48665800-48666600	Enhancers	Fetal Intestine Large	intestine
9	chr16:48665800-48666800	Enhancers	Liver	Liver
10	chr16:48666200-48666400	Enhancers	HepG2	liver
11	chr16:48666200-48666600	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links