Variant report

Variant rs6500397
Chromosome Location chr16:48642235-48642236
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:48630400-48642600 Enhancers Primary monocytes fromperipheralblood blood
2 chr16:48635600-48642400 Enhancers Primary Natural Killer cells fromperipheralblood blood
3 chr16:48635600-48642400 Enhancers Primary T killer naive cells fromperipheralblood blood
4 chr16:48635800-48642400 Enhancers Right Atrium heart
5 chr16:48636600-48642400 Enhancers Lung lung
6 chr16:48636600-48642600 Enhancers Spleen Spleen
7 chr16:48636600-48642800 Enhancers Left Ventricle heart
8 chr16:48636800-48642600 Enhancers Psoas Muscle Psoas
9 chr16:48637000-48642400 Weak transcription Fetal Muscle Trunk muscle
10 chr16:48637000-48642400 Enhancers Right Ventricle heart
11 chr16:48637200-48642600 Enhancers Gastric stomach
12 chr16:48638000-48642400 Weak transcription Aorta Aorta
13 chr16:48639000-48642400 Enhancers Small Intestine intestine
14 chr16:48639000-48642800 Enhancers Pancreas Pancrea
15 chr16:48639200-48642800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr16:48639200-48642800 Enhancers Sigmoid Colon Sigmoid Colon
17 chr16:48639400-48642600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
18 chr16:48639600-48642400 Flanking Active TSS Primary neutrophils fromperipheralblood blood
19 chr16:48639600-48642400 Enhancers Placenta Placenta
20 chr16:48639600-48642800 Enhancers Brain Substantia Nigra brain
21 chr16:48639800-48642400 Enhancers Fetal Intestine Large intestine
22 chr16:48640000-48643000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr16:48640000-48643000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr16:48640400-48643400 Flanking Active TSS Rectal Mucosa Donor 31 rectum
25 chr16:48640600-48643000 Flanking Active TSS HMEC breast
26 chr16:48640800-48642400 Genic enhancers K562 blood
27 chr16:48640800-48643400 Flanking Active TSS Primary T helper cells PMA-I stimulated --
28 chr16:48641000-48642400 Enhancers Primary B cells from peripheral blood blood
29 chr16:48641000-48642400 Enhancers NHDF-Ad bronchial
30 chr16:48641000-48642600 Genic enhancers H9 Derived Neuron Cultured Cells ES cell derived
31 chr16:48641000-48642600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr16:48641000-48642600 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr16:48641000-48642600 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
34 chr16:48641000-48642800 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr16:48641000-48642800 Flanking Active TSS Duodenum Smooth Muscle Duodenum
36 chr16:48641000-48643000 Flanking Active TSS Rectal Mucosa Donor 29 rectum
37 chr16:48641000-48643200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr16:48641200-48642400 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr16:48641200-48642400 Enhancers Fetal Brain Male brain
40 chr16:48641200-48642600 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
41 chr16:48641200-48642600 Flanking Active TSS NHEK skin
42 chr16:48641200-48642800 Flanking Active TSS Rectal Smooth Muscle rectum
43 chr16:48641200-48642800 Flanking Active TSS Thymus Thymus
44 chr16:48641200-48643000 Flanking Active TSS Fetal Brain Female brain
45 chr16:48641200-48644600 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr16:48641400-48643400 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
47 chr16:48641600-48642400 Enhancers H1 Cell Line embryonic stem cell
48 chr16:48641600-48642400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
49 chr16:48641600-48642400 Active TSS iPS-15b Cell Line embryonic stem cell
50 chr16:48641600-48642400 Enhancers Brain Hippocampus Middle brain

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