Variant report

Variant	rs1486412
Chromosome Location	chr16:48651750-48651751
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr16:48651566-48651830	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr16:48651387-48652099	H1-neurons	neurons:	n/a	n/a
3	NFIC	chr16:48651384-48652124	ECC-1	luminal epithelium:	n/a	chr16:48651743-48651771
4	PBX3	chr16:48651432-48651996	SK-N-SH	brain:	n/a	n/a
5	CEBPB	chr16:48651622-48651936	Hela-S3	cervix:	n/a	n/a
6	NFIC	chr16:48651470-48652086	SK-N-SH	brain:	n/a	chr16:48651743-48651771
7	NFIC	chr16:48651457-48651880	SK-N-SH	brain:	n/a	chr16:48651743-48651771
8	TCF12	chr16:48651499-48652094	SK-N-SH	brain:	n/a	n/a
9	REST	chr16:48651416-48651984	H1-neurons	neurons:	n/a	n/a
10	CEBPB	chr16:48651665-48651986	ECC-1	luminal epithelium:	n/a	n/a
11	REST	chr16:48651207-48652155	H1-neurons	neurons:	n/a	n/a
12	CEBPB	chr16:48651681-48651980	IMR90	lung:	n/a	n/a
13	TEAD4	chr16:48651451-48651891	ECC-1	luminal epithelium:	n/a	n/a
14	CEBPB	chr16:48651673-48652027	ECC-1	luminal epithelium:	n/a	n/a
15	MYC	chr16:48651678-48651840	MCF10A-Er-Src	breast:	n/a	n/a
16	EP300	chr16:48651616-48651896	SK-N-SH_RA	brain:	n/a	n/a
17	POLR2A	chr16:48651473-48651985	H1-neurons	neurons:	n/a	n/a
18	NFIC	chr16:48651420-48651987	ECC-1	luminal epithelium:	n/a	chr16:48651743-48651771

Variant related genes	Relation type
ENSG00000259912	TF binding region

Extended variants
information (count: 166 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:166)

rs_ID	r²[population]
rs1039340	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039341	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039342	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039343	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039344	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1106386	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11076570	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11076571	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11076572	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11076573	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11076578	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1115758	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1115759	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1120275	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1120276	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11495819	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11640119	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11640463	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11641458	1.00[CEU][hapmap];0.92[CHB][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11641510	0.87[ASN][1000 genomes]
rs11643264	0.87[EUR][1000 genomes]
rs11643272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11644518	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11645193	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11647046	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11647048	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11648101	0.85[EUR][1000 genomes]
rs11649236	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11859909	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1224	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12444902	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12446280	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12597928	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12598514	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12933948	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12935540	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13330784	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13331298	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13331902	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332125	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13335847	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1386040	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1386042	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1477134	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1486411	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1558815	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1564979	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564980	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16946340	0.92[CHB][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16946342	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17826468	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1825683	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1872652	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1872654	1.00[CEU][hapmap];0.92[CHB][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1872655	1.00[CEU][hapmap];0.92[CHB][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1909765	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1968903	0.85[ASN][1000 genomes]
rs1987061	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2041921	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2080507	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2080508	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2101372	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2129243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2354578	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2354579	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28432694	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28481630	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28577888	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28692806	0.84[EUR][1000 genomes]
rs2883475	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2883641	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34813315	0.84[EUR][1000 genomes]
rs36077931	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3743779	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3743780	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3817029	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3826174	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3843724	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3848319	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3848320	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3848321	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3848322	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4277341	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4471681	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4493038	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4785247	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4785248	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4785528	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55671623	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55782524	0.87[EUR][1000 genomes]
rs57903644	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61098261	0.93[ASN][1000 genomes]
rs6500395	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6500396	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6500397	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6500398	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6500405	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7184070	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7184144	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7185541	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7185899	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7187513	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7188741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7191028	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7191225	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7192297	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7194570	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7195684	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7196823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7197732	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7198145	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7198773	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7199206	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7199625	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7201196	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7204345	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74017013	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8044519	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8050844	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8052073	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8052640	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8053598	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8057165	0.80[EUR][1000 genomes]
rs8057777	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8058362	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8059819	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8059905	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs868792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs871902	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs904818	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs924476	0.87[EUR][1000 genomes]
rs989070	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9921737	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9921741	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9922356	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9922734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9923371	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9923753	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9924078	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9924483	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9925406	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9927888	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9928051	0.88[EUR][1000 genomes]
rs9930199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9931123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9931737	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9933187	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9933329	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9933976	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9934626	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9934844	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9936004	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9936271	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9936445	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9936446	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936454	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9937134	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9937568	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9937610	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9937623	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9938126	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9938308	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9938890	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9939103	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9941275	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9941336	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1486412	N4BP1	cis	multi-tissue	Pritchard

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48644200-48655400	Weak transcription	Spleen	Spleen
2	chr16:48644600-48656600	Weak transcription	Esophagus	oesophagus
3	chr16:48646000-48651800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr16:48646000-48655200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr16:48646000-48656600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr16:48646000-48657000	Weak transcription	Pancreas	Pancrea
7	chr16:48647200-48655400	Weak transcription	Liver	Liver
8	chr16:48647200-48657000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr16:48647600-48655400	Weak transcription	Colonic Mucosa	Colon
10	chr16:48647800-48652000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr16:48647800-48654400	Weak transcription	Primary B cells from cord blood	blood
12	chr16:48647800-48655000	Weak transcription	Fetal Thymus	thymus
13	chr16:48647800-48655200	Weak transcription	GM12878-XiMat	blood
14	chr16:48647800-48655400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr16:48647800-48656400	Weak transcription	Stomach Mucosa	stomach
16	chr16:48647800-48656400	Weak transcription	NHEK	skin
17	chr16:48647800-48656600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr16:48648400-48654800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr16:48648600-48653400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr16:48648600-48655200	Weak transcription	Thymus	Thymus
21	chr16:48648600-48656600	Weak transcription	Fetal Intestine Large	intestine
22	chr16:48648600-48657000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr16:48649800-48651800	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr16:48650000-48652200	Enhancers	Fetal Muscle Leg	muscle
25	chr16:48650200-48652200	Enhancers	Right Ventricle	heart
26	chr16:48650200-48653000	Enhancers	Lung	lung
27	chr16:48650400-48652200	Enhancers	Adipose Nuclei	Adipose
28	chr16:48650400-48652400	Weak transcription	Aorta	Aorta
29	chr16:48650600-48652200	Enhancers	Brain Anterior Caudate	brain
30	chr16:48650600-48652200	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr16:48650800-48652200	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr16:48650800-48652200	Enhancers	Fetal Brain Male	brain
33	chr16:48650800-48652200	Weak transcription	Left Ventricle	heart
34	chr16:48651200-48652200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr16:48651200-48652400	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr16:48651200-48652400	Enhancers	Fetal Muscle Trunk	muscle
37	chr16:48651400-48651800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr16:48651400-48651800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr16:48651400-48651800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr16:48651400-48651800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr16:48651400-48651800	Flanking Active TSS	Stomach Smooth Muscle	stomach
42	chr16:48651400-48652000	Enhancers	Primary hematopoietic stem cells	blood
43	chr16:48651400-48652000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr16:48651400-48652000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr16:48651400-48652000	Enhancers	Muscle Satellite Cultured Cells	--
46	chr16:48651400-48652000	Enhancers	A549	lung
47	chr16:48651400-48652000	Enhancers	Hela-S3	cervix
48	chr16:48651400-48652000	Enhancers	HSMM	muscle
49	chr16:48651400-48652200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr16:48651400-48652200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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