Variant report

Variant	rs9936446
Chromosome Location	chr16:48645807-48645808
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:48645567-48646047	HepG2	liver:	n/a	n/a
2	RELA	chr16:48645467-48646216	GM18951	blood:	n/a	chr16:48645634-48645643 chr16:48645634-48645643
3	ZNF143	chr16:48645662-48646077	GM12878	blood:	n/a	n/a
4	JUND	chr16:48645459-48646015	HepG2	liver:	n/a	n/a
5	POLR2A	chr16:48645685-48645953	GM12878	blood:	n/a	n/a
6	NFYB	chr16:48645582-48645962	K562	blood:	n/a	n/a
7	POLR2A	chr16:48645340-48646113	GM12878	blood:	n/a	n/a
8	EBF1	chr16:48645558-48645932	GM12878	blood:	n/a	chr16:48645743-48645754
9	POLR2A	chr16:48645326-48645978	HepG2	liver:	n/a	n/a
10	MAX	chr16:48645641-48645995	HepG2	liver:	n/a	n/a
11	SMC3	chr16:48645461-48645922	HepG2	liver:	n/a	n/a
12	USF1	chr16:48645622-48645999	HepG2	liver:	n/a	chr16:48645824-48645835
13	STAT3	chr16:48645406-48646150	MCF10A-Er-Src	breast:	n/a	chr16:48645912-48645920 chr16:48645560-48645567 chr16:48646083-48646095
14	CEBPB	chr16:48644807-48646004	K562	blood:	n/a	chr16:48645412-48645425 chr16:48645461-48645474 chr16:48645461-48645472 chr16:48644922-48644933
15	ATF3	chr16:48645677-48645950	K562	blood:	n/a	n/a
16	POLR2A	chr16:48645614-48645814	Hela-S3	cervix:	n/a	n/a
17	USF1	chr16:48645725-48645951	SK-N-SH_RA	brain:	n/a	chr16:48645824-48645835
18	POLR2A	chr16:48645275-48646104	MCF10A-Er-Src	breast:	n/a	n/a
19	POLR2A	chr16:48645557-48645948	K562	blood:	n/a	n/a
20	NFE2	chr16:48645712-48645912	GM12878	blood:	n/a	n/a
21	POLR2A	chr16:48645492-48646026	HepG2	liver:	n/a	n/a
22	POLR2A	chr16:48645750-48645850	MCF-7	breast:	n/a	n/a
23	MAX	chr16:48645674-48646077	NB4	blood:	n/a	n/a
24	MAFF	chr16:48645332-48646035	HepG2	liver:	n/a	n/a
25	POLR2A	chr16:48645400-48645994	H1-hESC	embryonic stem cell:	n/a	n/a
26	USF1	chr16:48645614-48646048	H1-hESC	embryonic stem cell:	n/a	chr16:48645824-48645835
27	USF1	chr16:48645600-48646107	H1-hESC	embryonic stem cell:	n/a	chr16:48645824-48645835
28	NFYB	chr16:48645550-48646041	GM12878	blood:	n/a	n/a
29	SPI1	chr16:48645776-48646253	GM12878	blood:	n/a	chr16:48646085-48646092 chr16:48646089-48646102 chr16:48646079-48646092
30	RUNX3	chr16:48645606-48646038	GM12878	blood:	n/a	n/a
31	POLR2A	chr16:48645366-48646240	H1-hESC	embryonic stem cell:	n/a	n/a
32	FOS	chr16:48645527-48646084	MCF10A-Er-Src	breast:	n/a	n/a
33	MAX	chr16:48645638-48645995	GM12878	blood:	n/a	n/a
34	POLR2A	chr16:48644987-48646202	GM12891	blood:	n/a	n/a
35	USF1	chr16:48645551-48646030	ECC-1	luminal epithelium:	n/a	chr16:48645824-48645835
36	POLR2A	chr16:48645800-48645832	MCF-7	breast:	n/a	n/a
37	MAX	chr16:48645678-48646089	H1-hESC	embryonic stem cell:	n/a	n/a
38	CEBPB	chr16:48645301-48646079	HepG2	liver:	n/a	chr16:48645412-48645425 chr16:48645461-48645474 chr16:48645461-48645472 chr16:48646026-48646039
39	POLR2A	chr16:48642218-48646032	MCF10A-Er-Src	breast:	n/a	n/a
40	FOS	chr16:48645671-48645846	MCF10A-Er-Src	breast:	n/a	n/a
41	TBP	chr16:48645686-48646030	HepG2	liver:	n/a	n/a
42	EP300	chr16:48645711-48646093	GM12878	blood:	n/a	n/a
43	USF1	chr16:48645679-48645934	A549	lung:	n/a	chr16:48645824-48645835
44	POLR2A	chr16:48645562-48646211	GM19193	blood:	n/a	n/a
45	FOS	chr16:48645598-48646025	MCF10A-Er-Src	breast:	n/a	n/a
46	STAT3	chr16:48645703-48646120	MCF10A-Er-Src	breast:	n/a	chr16:48645912-48645920 chr16:48646083-48646095
47	USF1	chr16:48645615-48645924	K562	blood:	n/a	chr16:48645824-48645835
48	USF2	chr16:48645659-48646110	GM12878	blood:	n/a	n/a
49	SPI1	chr16:48645769-48646228	HL-60	blood:	n/a	chr16:48646085-48646092 chr16:48646089-48646102 chr16:48646079-48646092
50	POLR2A	chr16:48644956-48646060	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr16:48263677..48266264-chr16:48645386..48647099,2	MCF-7	breast:
2	chr16:48418015..48420544-chr16:48643775..48645908,3	MCF-7	breast:
3	chr16:48630551..48632810-chr16:48645142..48647127,2	MCF-7	breast:
4	chr16:48388738..48391229-chr16:48644579..48647444,2	MCF-7	breast:

Variant related genes	Relation type
N4BP1	TF binding region
ENSG00000196470	Chromatin interaction
ENSG00000121270	Chromatin interaction
ENSG00000102910	Chromatin interaction

Extended variants
information (count: 164 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs1039340	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039341	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039342	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039343	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039344	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1106386	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11076570	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11076571	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11076572	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11076573	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11076578	0.85[EUR][1000 genomes]
rs1115758	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1115759	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1120275	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1120276	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11495819	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11640119	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11640463	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11641458	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11641510	0.87[ASN][1000 genomes]
rs11643264	0.86[EUR][1000 genomes]
rs11643272	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11644518	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11645193	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11647046	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11647048	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11648101	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11649236	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11859909	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1224	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12444902	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12446280	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12597928	0.85[EUR][1000 genomes]
rs12598514	0.85[EUR][1000 genomes]
rs12933948	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12935540	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13330784	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13331298	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13331902	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332125	0.98[ASN][1000 genomes]
rs13335847	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1386040	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1386042	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1477134	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1486411	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1486412	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1558815	0.82[EUR][1000 genomes]
rs1564979	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564980	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16946340	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16946342	0.91[EUR][1000 genomes]
rs17826468	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1825683	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1872652	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1872654	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1872655	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1909765	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1968903	0.85[ASN][1000 genomes]
rs1987061	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2041921	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2080507	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2080508	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2101372	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2129243	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2354578	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2354579	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28432694	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28481630	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28577888	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28692806	0.83[EUR][1000 genomes]
rs2883475	0.88[EUR][1000 genomes]
rs2883641	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34813315	0.85[EUR][1000 genomes]
rs36077931	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3743779	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3743780	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3817029	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3826174	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3843724	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3848319	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3848320	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3848321	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3848322	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4277341	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4471681	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4493038	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4785247	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4785248	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4785528	0.86[EUR][1000 genomes]
rs55671623	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55782524	0.88[EUR][1000 genomes]
rs57903644	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61098261	0.93[ASN][1000 genomes]
rs6500395	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6500396	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6500397	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6500398	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6500405	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7184070	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7184144	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7185541	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7185899	0.83[EUR][1000 genomes]
rs7187513	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7188741	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7191028	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7191225	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7192297	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7194570	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7195684	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7196823	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7197732	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7198145	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7198773	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7199206	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7199625	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7201196	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7204345	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74017013	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8044519	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8050844	0.96[ASN][1000 genomes]
rs8052073	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8052640	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8053598	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8057777	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8058362	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8059819	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8059905	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs868792	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs871902	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs924476	0.86[EUR][1000 genomes]
rs989070	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9921737	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9921741	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9922356	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9922734	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9923371	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9923753	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9924078	0.87[EUR][1000 genomes]
rs9924483	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9925406	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9927888	0.86[EUR][1000 genomes]
rs9928051	0.87[EUR][1000 genomes]
rs9930199	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9931123	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9931737	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9933187	0.86[EUR][1000 genomes]
rs9933329	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9933976	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9934626	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9934844	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9936004	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9936271	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9936445	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9936454	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9937134	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9937568	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9937610	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9937623	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9938126	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9938308	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9938890	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9939103	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9941275	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9941336	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9936446	N4BP1	cis	multi-tissue	Pritchard

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48644200-48647800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr16:48644200-48655400	Weak transcription	Spleen	Spleen
3	chr16:48644600-48646000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr16:48644600-48646600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr16:48644600-48646600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr16:48644600-48646600	Enhancers	Primary hematopoietic stem cells	blood
7	chr16:48644600-48646600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr16:48644600-48646800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr16:48644600-48646800	Enhancers	Duodenum Mucosa	Duodenum
10	chr16:48644600-48646800	Weak transcription	Fetal Brain Male	brain
11	chr16:48644600-48646800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr16:48644600-48647000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr16:48644600-48647000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr16:48644600-48647000	Weak transcription	Brain Substantia Nigra	brain
15	chr16:48644600-48647200	Weak transcription	Fetal Lung	lung
16	chr16:48644600-48647200	Weak transcription	Hela-S3	cervix
17	chr16:48644600-48647200	Weak transcription	HUVEC	blood vessel
18	chr16:48644600-48647600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr16:48644600-48647600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr16:48644600-48647800	Enhancers	Primary B cells from cord blood	blood
21	chr16:48644600-48647800	Enhancers	Fetal Thymus	thymus
22	chr16:48644600-48647800	Enhancers	Stomach Mucosa	stomach
23	chr16:48644600-48647800	Enhancers	HMEC	breast
24	chr16:48644600-48648800	Enhancers	Placenta	Placenta
25	chr16:48644600-48650200	Weak transcription	Right Ventricle	heart
26	chr16:48644600-48650400	Weak transcription	Fetal Heart	heart
27	chr16:48644600-48656600	Weak transcription	Esophagus	oesophagus
28	chr16:48644800-48646000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr16:48644800-48646000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr16:48644800-48646200	Weak transcription	Psoas Muscle	Psoas
31	chr16:48644800-48646600	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr16:48644800-48646800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr16:48644800-48646800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr16:48644800-48646800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr16:48644800-48647000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr16:48644800-48647000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr16:48644800-48647000	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr16:48644800-48647000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr16:48644800-48647200	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr16:48644800-48647200	Enhancers	Fetal Intestine Small	intestine
41	chr16:48644800-48647400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr16:48644800-48647400	Enhancers	Fetal Muscle Leg	muscle
43	chr16:48644800-48647600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr16:48644800-48647800	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr16:48644800-48647800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr16:48644800-48647800	Enhancers	Dnd41	blood
47	chr16:48644800-48648600	Enhancers	Fetal Intestine Large	intestine
48	chr16:48644800-48651600	Weak transcription	Brain Cingulate Gyrus	brain
49	chr16:48645000-48646000	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr16:48645000-48646800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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