Variant report

Variant	rs2883641
Chromosome Location	chr16:48664446-48664447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:48387653..48388232-chr16:48664055..48664936,2	K562	blood:

Extended variants
information (count: 154 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs1039340	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1039341	0.84[ASN][1000 genomes]
rs1039342	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1039343	0.84[ASN][1000 genomes]
rs1039344	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1106386	0.81[ASN][1000 genomes]
rs11076570	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11076571	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11076572	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11076573	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11076578	0.81[AMR][1000 genomes]
rs1115758	0.86[ASN][1000 genomes]
rs1115759	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1120275	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1120276	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11495819	0.84[AMR][1000 genomes]
rs11640119	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11640463	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11641458	0.92[CHB][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11641510	0.85[ASN][1000 genomes]
rs11643272	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11644518	0.85[ASN][1000 genomes]
rs11645193	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11647046	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11647048	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11648101	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11649236	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11859909	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1224	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12444902	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12446280	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12598514	0.82[AMR][1000 genomes]
rs12933948	0.87[AMR][1000 genomes]
rs12935540	0.81[ASN][1000 genomes]
rs13330784	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13331298	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13331902	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13332125	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13335847	0.85[ASN][1000 genomes]
rs1386040	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1386042	0.86[ASN][1000 genomes]
rs1477134	0.85[AMR][1000 genomes]
rs1486411	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1486412	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1564979	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1564980	0.82[AMR][1000 genomes]
rs16946340	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16946342	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17826468	0.84[ASN][1000 genomes]
rs1825683	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1872652	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1872654	0.92[CHB][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1872655	0.92[CHB][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1909765	0.86[ASN][1000 genomes]
rs1968903	0.83[ASN][1000 genomes]
rs1987061	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2041921	0.83[AMR][1000 genomes]
rs2080507	0.85[AMR][1000 genomes]
rs2080508	0.84[AMR][1000 genomes]
rs2101372	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2129243	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2354578	0.84[ASN][1000 genomes]
rs2354579	0.86[ASN][1000 genomes]
rs28432694	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28481630	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28577888	0.84[AMR][1000 genomes]
rs36077931	0.84[ASN][1000 genomes]
rs3743779	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs3743780	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3817029	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs3826174	0.84[ASN][1000 genomes]
rs3843724	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3848319	0.86[ASN][1000 genomes]
rs3848320	0.83[ASN][1000 genomes]
rs3848321	0.82[ASN][1000 genomes]
rs3848322	0.86[ASN][1000 genomes]
rs4277341	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4471681	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4493038	0.85[AMR][1000 genomes]
rs4785247	0.84[AMR][1000 genomes]
rs4785248	0.85[AMR][1000 genomes]
rs4785528	0.82[AMR][1000 genomes]
rs55671623	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57903644	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61098261	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6500395	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6500396	0.82[ASN][1000 genomes]
rs6500397	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6500398	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6500405	0.83[AMR][1000 genomes]
rs7184070	0.85[AMR][1000 genomes]
rs7184144	0.83[ASN][1000 genomes]
rs7185541	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185899	0.81[AMR][1000 genomes]
rs7187513	0.84[ASN][1000 genomes]
rs7188741	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7191028	0.86[ASN][1000 genomes]
rs7191225	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7192297	0.85[AMR][1000 genomes]
rs7194570	0.85[AMR][1000 genomes]
rs7195684	0.83[AMR][1000 genomes]
rs7196823	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7197732	0.84[ASN][1000 genomes]
rs7198145	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7198773	0.83[ASN][1000 genomes]
rs7199206	0.85[AMR][1000 genomes]
rs7199625	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7201196	0.85[AMR][1000 genomes]
rs7204345	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74017013	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8044519	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8050844	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8052073	0.83[AMR][1000 genomes]
rs8052640	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs8053598	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8057777	0.84[ASN][1000 genomes]
rs8058362	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8059819	0.92[CHB][hapmap];0.84[AMR][1000 genomes]
rs8059905	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs868792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs871902	0.84[ASN][1000 genomes]
rs904818	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs989070	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9921737	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9921741	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9922356	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9922734	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9923371	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9923753	0.85[ASN][1000 genomes]
rs9924483	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9925406	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9930199	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9930644	0.96[CEU][hapmap]
rs9931123	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9931737	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9933329	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9933976	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9934626	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9934844	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9936004	0.84[ASN][1000 genomes]
rs9936271	0.86[ASN][1000 genomes]
rs9936445	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9936446	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9936454	0.80[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs9937134	0.84[ASN][1000 genomes]
rs9937568	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9937610	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9937623	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs9938126	0.84[ASN][1000 genomes]
rs9938308	0.84[ASN][1000 genomes]
rs9938890	0.86[ASN][1000 genomes]
rs9939103	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs9941275	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9941336	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2883641	N4BP1	cis	multi-tissue	Pritchard

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48658000-48667200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr16:48658000-48670400	Weak transcription	Pancreas	Pancrea
3	chr16:48662400-48664800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr16:48662800-48667400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr16:48663000-48666400	Weak transcription	Fetal Intestine Small	intestine
6	chr16:48663600-48664800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr16:48664000-48664600	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr16:48664000-48664600	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr16:48664000-48664600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr16:48664000-48664600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr16:48664000-48664600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr16:48664000-48664600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr16:48664000-48664600	Flanking Active TSS	Colon Smooth Muscle	Colon
14	chr16:48664000-48664600	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr16:48664000-48664600	Active TSS	A549	lung
16	chr16:48664000-48664800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr16:48664000-48664800	Enhancers	Primary B cells from peripheral blood	blood
18	chr16:48664000-48664800	Enhancers	Liver	Liver
19	chr16:48664000-48664800	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr16:48664000-48664800	Enhancers	Dnd41	blood
21	chr16:48664000-48664800	Flanking Active TSS	HepG2	liver
22	chr16:48664000-48674000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr16:48664200-48664600	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr16:48664200-48664600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr16:48664200-48664600	Enhancers	Primary hematopoietic stem cells	blood
26	chr16:48664200-48664600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr16:48664200-48664600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr16:48664200-48664600	Flanking Active TSS	Brain Hippocampus Middle	brain
29	chr16:48664200-48664600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
30	chr16:48664200-48664800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr16:48664200-48664800	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr16:48664200-48664800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr16:48664200-48664800	Enhancers	Brain Angular Gyrus	brain
34	chr16:48664200-48664800	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr16:48664200-48664800	Enhancers	Stomach Mucosa	stomach
36	chr16:48664200-48665000	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr16:48664200-48665000	Enhancers	Fetal Heart	heart
38	chr16:48664400-48664600	Active TSS	HUES6 Cell Line	embryonic stem cell
39	chr16:48664400-48664600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr16:48664400-48664600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr16:48664400-48664600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr16:48664400-48664600	Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr16:48664400-48664600	Active TSS	Hela-S3	cervix
44	chr16:48664400-48664600	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr16:48664400-48664600	Active TSS	Osteobl	bone
46	chr16:48664400-48664800	Enhancers	Primary T cells fromperipheralblood	blood
47	chr16:48664400-48664800	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr16:48664400-48664800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr16:48664400-48664800	Enhancers	Brain Substantia Nigra	brain
50	chr16:48664400-48664800	Enhancers	Duodenum Mucosa	Duodenum

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