Variant report

Variant	rs868792
Chromosome Location	chr16:48640632-48640633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:48638871..48640791-chr16:48642625..48644509,2	K562	blood:
2	chr16:48639871..48642943-chr16:48643346..48645873,3	MCF-7	breast:
3	chr16:48631621..48634896-chr16:48639433..48642091,3	K562	blood:

Variant related genes	Relation type
ENSG00000260033	Chromatin interaction
ENSG00000102921	Chromatin interaction

Extended variants
information (count: 166 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:166)

rs_ID	r²[population]
rs1039340	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1039341	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1039342	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1039343	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1039344	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1106386	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11076570	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11076571	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11076572	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11076573	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11076578	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1115758	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1115759	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1120275	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1120276	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11495819	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11640119	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11640463	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11641458	1.00[CEU][hapmap];0.92[CHB][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11641510	0.89[ASN][1000 genomes]
rs11643264	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11643272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11644518	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11645193	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11647046	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11647048	1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11648101	0.85[EUR][1000 genomes]
rs11649236	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11859909	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1224	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12444902	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12446280	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12597928	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12598514	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12933948	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12935540	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13330784	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13331298	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13331902	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13332125	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13335847	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1386040	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1386042	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1477134	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1486411	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1486412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1558815	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1564979	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1564980	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16946340	0.92[CHB][hapmap]
rs16946342	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17826468	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1825683	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1872652	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1872654	1.00[CEU][hapmap];0.92[CHB][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1872655	1.00[CEU][hapmap];0.92[CHB][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1909765	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1968903	0.83[ASN][1000 genomes]
rs1987061	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041921	0.85[EUR][1000 genomes]
rs2080507	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2080508	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2101372	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2129243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2354578	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2354579	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28432694	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28481630	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28577888	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28692806	0.84[EUR][1000 genomes]
rs2883475	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2883641	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34813315	0.84[EUR][1000 genomes]
rs36077931	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3743779	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3743780	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3817029	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3826174	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3843724	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3848319	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3848320	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3848321	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3848322	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4277341	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4471681	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4493038	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4785247	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4785248	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4785528	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55671623	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55782524	0.87[EUR][1000 genomes]
rs57903644	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61098261	0.91[ASN][1000 genomes]
rs6500395	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6500396	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6500397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6500398	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6500405	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7184070	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7184144	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7185541	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7185899	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7187513	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7188741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7191028	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7191225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7192297	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7194570	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7195684	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7196823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7197732	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7198145	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7198773	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7199206	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7199625	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7201196	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7204345	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74017013	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8044519	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8050844	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8052073	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8052640	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8053598	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8057165	0.80[EUR][1000 genomes]
rs8057777	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8058362	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8059819	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8059905	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs871902	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs904818	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs924476	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs989070	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9921737	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9921741	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9922356	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9923371	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9923753	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9924078	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9924483	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9925406	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9927888	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9928051	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9930199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9931123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9931737	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9933187	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9933329	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9933976	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9934626	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9934844	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9936004	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9936271	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9936445	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9936446	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9936454	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9937134	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9937568	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9937610	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9937623	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9938126	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9938308	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9938890	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9939103	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9941275	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9941336	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs868792	N4BP1	cis	multi-tissue	Pritchard

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48629800-48641800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr16:48630000-48641200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr16:48630000-48641600	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr16:48630400-48642600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr16:48630600-48641000	Weak transcription	HSMMtube	muscle
6	chr16:48632200-48641000	Weak transcription	Osteobl	bone
7	chr16:48632800-48640800	Weak transcription	Hela-S3	cervix
8	chr16:48634200-48642200	Weak transcription	HUVEC	blood vessel
9	chr16:48634400-48642200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr16:48635000-48641200	Enhancers	Stomach Mucosa	stomach
11	chr16:48635200-48640800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr16:48635400-48641200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr16:48635400-48641400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr16:48635600-48641000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr16:48635600-48642400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr16:48635600-48642400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr16:48635800-48642400	Enhancers	Right Atrium	heart
18	chr16:48636600-48642400	Enhancers	Lung	lung
19	chr16:48636600-48642600	Enhancers	Spleen	Spleen
20	chr16:48636600-48642800	Enhancers	Left Ventricle	heart
21	chr16:48636800-48641000	Enhancers	Adipose Nuclei	Adipose
22	chr16:48636800-48642600	Enhancers	Psoas Muscle	Psoas
23	chr16:48637000-48641200	Weak transcription	Fetal Brain Male	brain
24	chr16:48637000-48642400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr16:48637000-48642400	Enhancers	Right Ventricle	heart
26	chr16:48637200-48641000	Enhancers	Colonic Mucosa	Colon
27	chr16:48637200-48641000	Enhancers	Duodenum Mucosa	Duodenum
28	chr16:48637200-48642600	Enhancers	Gastric	stomach
29	chr16:48637400-48640800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr16:48637800-48641000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr16:48637800-48642200	Enhancers	Liver	Liver
32	chr16:48638000-48641800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr16:48638000-48642400	Weak transcription	Aorta	Aorta
34	chr16:48638200-48641000	Weak transcription	Primary B cells from peripheral blood	blood
35	chr16:48638200-48641200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr16:48638400-48641000	Weak transcription	NHDF-Ad	bronchial
37	chr16:48638600-48641000	Enhancers	H1 Cell Line	embryonic stem cell
38	chr16:48638600-48641000	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr16:48638800-48642000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr16:48639000-48641000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr16:48639000-48641000	Enhancers	Brain Hippocampus Middle	brain
42	chr16:48639000-48641000	Enhancers	Stomach Smooth Muscle	stomach
43	chr16:48639000-48641200	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr16:48639000-48641600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr16:48639000-48642000	Genic enhancers	Fetal Muscle Leg	muscle
46	chr16:48639000-48642200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr16:48639000-48642200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr16:48639000-48642400	Enhancers	Small Intestine	intestine
49	chr16:48639000-48642800	Enhancers	Pancreas	Pancrea
50	chr16:48639200-48640800	Genic enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links