Variant report

Variant	rs28692806
Chromosome Location	chr16:48671899-48671900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs11076573	0.82[EUR][1000 genomes]
rs11076578	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11495819	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11640119	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11640463	0.84[EUR][1000 genomes]
rs11641458	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11643272	0.84[EUR][1000 genomes]
rs11648101	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11649236	0.83[EUR][1000 genomes]
rs11859909	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12444902	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12446280	0.81[EUR][1000 genomes]
rs12597928	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12598514	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12926465	0.82[ASN][1000 genomes]
rs12933948	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13330784	0.81[AMR][1000 genomes]
rs13331298	0.81[AMR][1000 genomes]
rs13331902	0.81[EUR][1000 genomes]
rs13332125	0.81[AMR][1000 genomes]
rs1386040	0.83[EUR][1000 genomes]
rs1477134	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1486412	0.84[EUR][1000 genomes]
rs1558815	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1564979	0.83[EUR][1000 genomes]
rs16946340	0.87[ASN][1000 genomes]
rs16946342	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1825683	0.81[EUR][1000 genomes]
rs1872652	0.82[EUR][1000 genomes]
rs1872654	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1872655	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1987061	0.83[EUR][1000 genomes]
rs2041921	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2080507	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2080508	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2129243	0.83[EUR][1000 genomes]
rs28481630	0.82[AMR][1000 genomes]
rs28577888	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3743780	0.84[EUR][1000 genomes]
rs4277341	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4471681	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4493038	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4785247	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4785248	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4785528	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55671623	0.83[EUR][1000 genomes]
rs6500397	0.83[EUR][1000 genomes]
rs6500398	0.84[EUR][1000 genomes]
rs6500405	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7184070	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7185541	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7185899	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7191028	0.80[EUR][1000 genomes]
rs7191225	0.82[AMR][1000 genomes]
rs7192297	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7194570	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7195684	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7198145	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7199206	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7199625	0.83[EUR][1000 genomes]
rs7201196	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7204345	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74017013	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs8044519	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8050844	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs8052073	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8053598	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8058362	0.84[EUR][1000 genomes]
rs8059819	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8059905	0.81[EUR][1000 genomes]
rs868792	0.84[EUR][1000 genomes]
rs9922356	0.83[EUR][1000 genomes]
rs9923371	0.83[EUR][1000 genomes]
rs9924483	0.83[EUR][1000 genomes]
rs9925406	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9933329	0.84[EUR][1000 genomes]
rs9934844	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9936446	0.83[EUR][1000 genomes]
rs9937610	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9941336	0.82[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48664000-48674000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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