Variant report

Variant	rs9939103
Chromosome Location	chr16:48592376-48592377
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr16:48592161-48592871	IMR90	lung:	n/a	chr16:48592529-48592541
2	MAX	chr16:48592201-48592768	NB4	blood:	n/a	n/a
3	POLR2A	chr16:48592161-48592688	HL-60	blood:	n/a	n/a
4	MAFK	chr16:48592279-48592807	IMR90	lung:	n/a	n/a
5	GABPA	chr16:48592169-48592841	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:48591088..48592950-chr16:48601911..48604687,2	MCF-7	breast:
2	chr16:48591602..48593821-chr16:48642725..48645233,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261267	TF binding region
N4BP1	TF binding region
ENSG00000102921	Chromatin interaction

Extended variants
information (count: 168 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:167)

rs_ID	r²[population]
rs1039340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1039341	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1039342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1039343	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1039344	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1106386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11076570	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11076571	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11076572	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11076573	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11076578	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1115758	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1115759	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1120275	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1120276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11495819	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11640119	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11640463	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11641458	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11641510	0.97[ASN][1000 genomes]
rs11643264	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11643272	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11644518	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11645193	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11647046	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11647048	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11648101	0.81[EUR][1000 genomes]
rs11649236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11859909	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12443883	0.82[JPT][hapmap]
rs12444902	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12446280	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12597928	0.82[EUR][1000 genomes]
rs12598514	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12933948	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12935540	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13330784	0.86[ASN][1000 genomes]
rs13331298	0.84[ASN][1000 genomes]
rs13331902	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13332125	0.86[ASN][1000 genomes]
rs13335847	0.84[EUR][1000 genomes]
rs1386040	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1386042	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1477134	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1486411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1486412	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1564979	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1564980	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16946340	0.92[CHB][hapmap]
rs16946342	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17826468	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1825683	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1872652	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1872654	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1872655	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1909765	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1987061	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2041921	0.82[EUR][1000 genomes]
rs2080507	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2080508	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2101372	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2129243	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2354578	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2354579	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28432694	0.84[ASN][1000 genomes]
rs28481630	0.86[ASN][1000 genomes]
rs28577888	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2883475	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2883641	0.84[ASN][1000 genomes]
rs34813315	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36077931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743780	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3817029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3826174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3843724	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3848319	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3848320	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3848321	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3848322	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4277341	0.83[ASN][1000 genomes]
rs4471681	0.84[ASN][1000 genomes]
rs4493038	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4785247	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4785248	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4785522	0.82[JPT][hapmap]
rs4785523	0.81[JPT][hapmap]
rs4785524	0.81[JPT][hapmap]
rs4785528	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55671623	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55782524	0.92[EUR][1000 genomes]
rs57903644	0.83[ASN][1000 genomes]
rs61098261	0.81[ASN][1000 genomes]
rs6500395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6500396	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6500397	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6500398	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6500405	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7184070	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7184144	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7185541	0.84[ASN][1000 genomes]
rs7185899	0.81[AMR][1000 genomes]
rs7187513	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7188741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7191028	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7191225	1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.86[ASN][1000 genomes]
rs7192297	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7194570	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7195684	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7196823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7197732	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7198145	1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7198773	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7199206	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7199625	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7201196	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7204345	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs74017013	0.84[ASN][1000 genomes]
rs8044519	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8050844	0.84[ASN][1000 genomes]
rs8052073	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8052640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8053598	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8057165	0.85[EUR][1000 genomes]
rs8057777	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8058362	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8059819	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8059905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs868792	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs871902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs904818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs924476	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs989070	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9921737	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9921741	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922356	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9922734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9923371	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9923753	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9924078	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9924483	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9925406	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9927888	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9928051	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9930199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9931123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9931737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9933187	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9933329	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9933976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9934626	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9934844	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9936004	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936271	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9936445	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9936446	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9936454	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9937134	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9937568	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9937610	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9937623	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9938126	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9938308	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9938890	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9941275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9941336	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061316	chr16:48264175-48594219	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9939103	N4BP1	cis	multi-tissue	Pritchard

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48572400-48592400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:48576200-48593600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:48577200-48596800	Weak transcription	Colonic Mucosa	Colon
4	chr16:48578400-48593600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr16:48578400-48601800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr16:48580800-48594600	Weak transcription	Fetal Kidney	kidney
7	chr16:48583800-48617800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr16:48585400-48594600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr16:48586200-48597400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr16:48586400-48593800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr16:48586400-48594400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr16:48587000-48592400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr16:48587400-48594400	Weak transcription	Fetal Thymus	thymus
14	chr16:48587400-48594800	Enhancers	Fetal Heart	heart
15	chr16:48587800-48592400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr16:48588400-48592800	Enhancers	Right Ventricle	heart
17	chr16:48588400-48594800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr16:48588600-48593800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr16:48588600-48594200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr16:48588800-48592400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr16:48588800-48592800	Enhancers	Fetal Brain Male	brain
22	chr16:48588800-48593000	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr16:48588800-48596000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr16:48588800-48597200	Enhancers	Liver	Liver
25	chr16:48589000-48595800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr16:48589200-48592400	Enhancers	Primary T cells from cord blood	blood
27	chr16:48589200-48592400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr16:48589200-48594000	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr16:48589200-48594400	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr16:48589400-48592400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr16:48589400-48593400	Weak transcription	Lung	lung
32	chr16:48589400-48593400	Weak transcription	Dnd41	blood
33	chr16:48589400-48593600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr16:48589400-48593600	Weak transcription	Placenta	Placenta
35	chr16:48589400-48594600	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr16:48589400-48594800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr16:48589400-48594800	Weak transcription	Pancreas	Pancrea
38	chr16:48589400-48601400	Weak transcription	Gastric	stomach
39	chr16:48589400-48603400	Weak transcription	Esophagus	oesophagus
40	chr16:48589400-48608800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr16:48589400-48609400	Weak transcription	Thymus	Thymus
42	chr16:48589400-48609600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr16:48589600-48592400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr16:48589600-48592400	Enhancers	NHLF	lung
45	chr16:48589600-48593800	Weak transcription	Primary B cells from peripheral blood	blood
46	chr16:48589600-48594200	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr16:48589800-48592800	Enhancers	Osteobl	bone
48	chr16:48589800-48593400	Enhancers	HMEC	breast
49	chr16:48589800-48593600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr16:48590000-48593600	Weak transcription	Fetal Stomach	stomach

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