Variant report

Variant	rs12443883
Chromosome Location	chr16:48602733-48602734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:48591088..48592950-chr16:48601911..48604687,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11076574	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12443672	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12597314	0.83[EUR][1000 genomes]
rs1825684	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1906047	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3743778	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4785522	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4785523	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4785524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55987128	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61268951	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9939103	0.82[JPT][hapmap]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48583800-48617800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr16:48589400-48603400	Weak transcription	Esophagus	oesophagus
3	chr16:48589400-48608800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr16:48589400-48609400	Weak transcription	Thymus	Thymus
5	chr16:48589400-48609600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr16:48590000-48604200	Weak transcription	Spleen	Spleen
7	chr16:48591200-48607600	Weak transcription	Hela-S3	cervix
8	chr16:48591200-48611400	Weak transcription	Fetal Intestine Small	intestine
9	chr16:48591200-48611600	Weak transcription	Fetal Brain Female	brain
10	chr16:48591400-48617200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr16:48592600-48613400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr16:48592800-48603200	Weak transcription	Stomach Mucosa	stomach
13	chr16:48592800-48611000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr16:48593600-48607800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr16:48593800-48608800	Weak transcription	Aorta	Aorta
16	chr16:48594000-48603200	Weak transcription	Right Ventricle	heart
17	chr16:48594000-48603400	Weak transcription	Fetal Stomach	stomach
18	chr16:48594000-48603600	Weak transcription	Right Atrium	heart
19	chr16:48594000-48604400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr16:48594000-48606200	Weak transcription	Ovary	ovary
21	chr16:48594000-48617800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr16:48594400-48608800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr16:48595000-48603600	Weak transcription	Psoas Muscle	Psoas
24	chr16:48595200-48609600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr16:48595200-48624000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr16:48595800-48609600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr16:48595800-48610600	Weak transcription	Primary B cells from cord blood	blood
28	chr16:48596000-48604000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr16:48596000-48606800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr16:48596000-48607600	Weak transcription	Fetal Lung	lung
31	chr16:48596000-48609400	Weak transcription	Fetal Thymus	thymus
32	chr16:48596000-48613600	Weak transcription	Fetal Intestine Large	intestine
33	chr16:48596000-48624400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr16:48596200-48603200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr16:48596200-48603400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr16:48596200-48603600	Weak transcription	Fetal Muscle Leg	muscle
37	chr16:48596200-48604800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr16:48596200-48606400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr16:48596200-48607800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr16:48596200-48607800	Weak transcription	Fetal Kidney	kidney
41	chr16:48596200-48610800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr16:48596200-48612800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr16:48596200-48612800	Weak transcription	Placenta	Placenta
44	chr16:48596200-48615200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr16:48596400-48603200	Weak transcription	Adipose Nuclei	Adipose
46	chr16:48596400-48604800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr16:48596400-48606000	Weak transcription	Primary T cells from cord blood	blood
48	chr16:48596400-48607800	Weak transcription	A549	lung
49	chr16:48596400-48608200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr16:48596400-48609600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links