Variant report

Variant	rs1906047
Chromosome Location	chr16:48674297-48674298
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11076574	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12443883	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12597314	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16946440	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1825684	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3743778	0.82[EUR][1000 genomes]
rs4142777	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4785522	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[EUR][1000 genomes]
rs4785523	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4785524	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs55987128	0.81[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1906047	ABCC12	cis	parietal	SCAN
rs1906047	NKD1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48674000-48674800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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