Variant report

Variant	rs11076574
Chromosome Location	chr16:48662802-48662803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:48396664..48398744-chr16:48661857..48664145,2	K562	blood:

Variant related genes	Relation type
ENSG00000196470	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12443672	0.86[EUR][1000 genomes]
rs12443883	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12597314	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1825684	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1906047	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3743778	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4142777	0.84[AMR][1000 genomes]
rs4785522	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4785523	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4785524	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55987128	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61268951	0.85[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48657800-48664000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr16:48657800-48664000	Weak transcription	Colon Smooth Muscle	Colon
3	chr16:48658000-48663800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr16:48658000-48664000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr16:48658000-48664000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr16:48658000-48664000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr16:48658000-48664000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr16:48658000-48664000	Weak transcription	Hela-S3	cervix
9	chr16:48658000-48664000	Weak transcription	NHDF-Ad	bronchial
10	chr16:48658000-48664000	Weak transcription	Osteobl	bone
11	chr16:48658000-48664200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr16:48658000-48667200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr16:48658000-48670400	Weak transcription	Pancreas	Pancrea
14	chr16:48658600-48663400	Weak transcription	Lung	lung
15	chr16:48658600-48664000	Weak transcription	Placenta	Placenta
16	chr16:48658600-48664000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr16:48658800-48663800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr16:48658800-48663800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr16:48658800-48664000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr16:48658800-48664000	Weak transcription	Fetal Thymus	thymus
21	chr16:48658800-48664200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr16:48659000-48663600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr16:48661600-48664200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr16:48662000-48663400	Enhancers	Fetal Intestine Large	intestine
25	chr16:48662000-48664200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr16:48662000-48664200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr16:48662400-48663000	Enhancers	Fetal Intestine Small	intestine
28	chr16:48662400-48664800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr16:48662800-48664000	Enhancers	HepG2	liver
30	chr16:48662800-48667400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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