Variant report

Variant	rs1825684
Chromosome Location	chr16:48639162-48639163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:48638871..48640791-chr16:48642625..48644509,2	K562	blood:

Variant related genes	Relation type
ENSG00000102921	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11076574	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12443672	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12443883	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12597314	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1906047	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3743778	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4785522	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4785523	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4785524	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55987128	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61268951	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48618200-48640400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr16:48626400-48640400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr16:48628400-48639800	Weak transcription	A549	lung
4	chr16:48629800-48639800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr16:48629800-48640000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr16:48629800-48641800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr16:48630000-48641200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr16:48630000-48641600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr16:48630200-48639200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr16:48630400-48639800	Weak transcription	Fetal Thymus	thymus
11	chr16:48630400-48642600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr16:48630600-48641000	Weak transcription	HSMMtube	muscle
13	chr16:48631800-48639400	Weak transcription	Thymus	Thymus
14	chr16:48631800-48639800	Weak transcription	Fetal Stomach	stomach
15	chr16:48632000-48639600	Weak transcription	Placenta	Placenta
16	chr16:48632000-48640200	Weak transcription	HSMM	muscle
17	chr16:48632200-48639200	Weak transcription	HMEC	breast
18	chr16:48632200-48639400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr16:48632200-48639400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr16:48632200-48639800	Weak transcription	Dnd41	blood
21	chr16:48632200-48641000	Weak transcription	Osteobl	bone
22	chr16:48632400-48639600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr16:48632400-48640400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr16:48632800-48640800	Weak transcription	Hela-S3	cervix
25	chr16:48633000-48639800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr16:48633200-48639400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr16:48633400-48640400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr16:48634200-48642200	Weak transcription	HUVEC	blood vessel
29	chr16:48634400-48642200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr16:48634600-48639400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr16:48635000-48641200	Enhancers	Stomach Mucosa	stomach
32	chr16:48635200-48640800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr16:48635400-48639200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr16:48635400-48641200	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr16:48635400-48641400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr16:48635600-48639800	Enhancers	Primary T cells fromperipheralblood	blood
37	chr16:48635600-48640600	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr16:48635600-48641000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr16:48635600-48642400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr16:48635600-48642400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr16:48635800-48642400	Enhancers	Right Atrium	heart
42	chr16:48636000-48639400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr16:48636600-48639400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr16:48636600-48642400	Enhancers	Lung	lung
45	chr16:48636600-48642600	Enhancers	Spleen	Spleen
46	chr16:48636600-48642800	Enhancers	Left Ventricle	heart
47	chr16:48636800-48640400	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr16:48636800-48641000	Enhancers	Adipose Nuclei	Adipose
49	chr16:48636800-48642600	Enhancers	Psoas Muscle	Psoas
50	chr16:48637000-48639400	Enhancers	HepG2	liver

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