Variant report

Variant	rs16946440
Chromosome Location	chr16:48721543-48721544
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:48721148..48722044-chr16:49386580..49387492,2	MCF-7	breast:
2	chr16:48721398..48722147-chr16:49384170..49385074,3	MCF-7	breast:
3	chr16:48721178..48722018-chr2:158073827..158074651,2	MCF-7	breast:
4	chr16:48721039..48721999-chr16:49384076..49384693,3	K562	blood:
5	chr16:48721362..48721883-chr16:49217565..49218545,2	MCF-7	breast:
6	chr16:48721525..48722065-chr16:49386573..49387511,3	K562	blood:
7	chr16:48721221..48722025-chr16:49217746..49218456,3	MCF-7	breast:
8	chr16:48715618..48717300-chr16:48719553..48721792,2	K562	blood:
9	chr16:48721497..48722009-chr16:49034133..49034729,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12443883	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs12597314	0.84[EUR][1000 genomes]
rs1906047	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3743778	0.86[AMR][1000 genomes]
rs4142777	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4785522	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4785523	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap]
rs4785524	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[CHD][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16946440	ABCC12	cis	parietal	SCAN
rs16946440	NKD1	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48721200-48721600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr16:48721200-48721600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr16:48721200-48721800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr16:48721400-48721600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr16:48721400-48721600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr16:48721400-48721600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr16:48721400-48721600	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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