Variant report

Variant	rs1969034
Chromosome Location	chr6:37405261-37405262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37393178..37396451-chr6:37404709..37407721,4	K562	blood:
2	chr6:37388900..37391581-chr6:37403584..37406042,2	MCF-7	breast:
3	chr6:37403638..37405474-chr6:37410855..37413567,2	K562	blood:
4	chr6:37403280..37405823-chr6:37419458..37421691,2	MCF-7	breast:

rs_ID	r²[population]
rs2014974	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2646925	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2776907	0.87[AFR][1000 genomes]
rs2776914	0.85[AFR][1000 genomes]
rs904249	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs931648	0.82[AFR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37401800-37406000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:37401800-37414000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:37402200-37405400	Weak transcription	NH-A	brain
4	chr6:37402200-37405800	Weak transcription	Psoas Muscle	Psoas
5	chr6:37402200-37408000	Weak transcription	A549	lung
6	chr6:37402200-37408600	Weak transcription	Aorta	Aorta
7	chr6:37402200-37414000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:37402200-37417800	Weak transcription	Small Intestine	intestine
9	chr6:37402200-37427800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:37402400-37405400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:37402400-37405800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:37402400-37405800	Weak transcription	Stomach Mucosa	stomach
13	chr6:37402400-37406600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:37402400-37406600	Weak transcription	HUVEC	blood vessel
15	chr6:37402400-37408000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:37402400-37410200	Weak transcription	Right Atrium	heart
17	chr6:37402400-37411800	Weak transcription	Fetal Heart	heart
18	chr6:37402400-37413600	Weak transcription	HMEC	breast
19	chr6:37402800-37411800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:37403000-37409600	Strong transcription	Fetal Intestine Small	intestine
21	chr6:37403000-37434400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr6:37403200-37405800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:37403200-37406200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:37403200-37406400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:37403200-37406600	Strong transcription	Fetal Lung	lung
26	chr6:37403200-37407200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:37403200-37407800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:37403200-37408200	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:37403200-37409000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:37403200-37409800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr6:37403200-37410000	Strong transcription	Fetal Muscle Trunk	muscle
32	chr6:37403200-37410200	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr6:37403200-37410800	Strong transcription	Primary B cells from cord blood	blood
34	chr6:37403200-37410800	Strong transcription	Fetal Muscle Leg	muscle
35	chr6:37403200-37418400	Strong transcription	Fetal Stomach	stomach
36	chr6:37403200-37422000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:37403200-37423800	Strong transcription	Fetal Thymus	thymus
38	chr6:37403200-37432000	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr6:37403200-37432600	Strong transcription	Placenta	Placenta
40	chr6:37403200-37433200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:37403400-37405600	Strong transcription	HSMM	muscle
42	chr6:37403400-37405800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr6:37403400-37405800	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:37403400-37406000	Strong transcription	Ovary	ovary
45	chr6:37403400-37406200	Strong transcription	HepG2	liver
46	chr6:37403400-37406400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr6:37403400-37407000	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:37403400-37407600	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr6:37403400-37407600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:37403400-37408200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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