Variant report

Variant	rs2014974
Chromosome Location	chr6:37402504-37402505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37401832..37403890-chr6:37408583..37410719,2	K562	blood:
2	chr6:37402160..37403723-chr6:37408796..37410403,2	MCF-7	breast:
3	chr6:37402051..37404356-chr6:37464049..37465588,2	K562	blood:
4	chr6:37400721..37403243-chr6:74228826..74231547,2	K562	blood:
5	chr6:37400455..37402954-chr6:37426378..37431695,5	K562	blood:

Variant related genes	Relation type
ENSG00000156508	Chromatin interaction
ENSG00000137200	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16889785	1.00[EUR][1000 genomes]
rs1969034	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2646925	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2776903	1.00[EUR][1000 genomes]
rs2776907	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2776914	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41462250	1.00[EUR][1000 genomes]
rs61541408	1.00[EUR][1000 genomes]
rs73730754	1.00[EUR][1000 genomes]
rs904249	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs931648	1.00[EUR][1000 genomes]
rs9968949	1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37400000-37402600	Active TSS	GM12878-XiMat	blood
2	chr6:37401400-37402800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr6:37401600-37402600	Flanking Active TSS	Dnd41	blood
4	chr6:37401600-37402600	Flanking Active TSS	NHEK	skin
5	chr6:37401800-37404600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:37401800-37406000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:37401800-37414000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:37402000-37402600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:37402000-37402600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:37402000-37402600	Enhancers	Right Ventricle	heart
11	chr6:37402000-37402800	Enhancers	Lung	lung
12	chr6:37402000-37402800	Flanking Active TSS	HepG2	liver
13	chr6:37402000-37403400	Enhancers	Colon Smooth Muscle	Colon
14	chr6:37402000-37403400	Weak transcription	Ovary	ovary
15	chr6:37402200-37402600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:37402200-37402600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:37402200-37402600	Enhancers	Fetal Kidney	kidney
18	chr6:37402200-37402600	Enhancers	Fetal Thymus	thymus
19	chr6:37402200-37402600	Enhancers	Left Ventricle	heart
20	chr6:37402200-37402800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:37402200-37402800	Enhancers	Primary B cells from cord blood	blood
22	chr6:37402200-37402800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr6:37402200-37402800	Enhancers	Placenta	Placenta
24	chr6:37402200-37403000	Enhancers	Primary B cells from peripheral blood	blood
25	chr6:37402200-37403000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr6:37402200-37403000	Weak transcription	Fetal Intestine Small	intestine
27	chr6:37402200-37403000	Enhancers	Fetal Muscle Leg	muscle
28	chr6:37402200-37403200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:37402200-37403200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:37402200-37403200	Weak transcription	Fetal Stomach	stomach
31	chr6:37402200-37403200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:37402200-37403200	Weak transcription	Thymus	Thymus
33	chr6:37402200-37403400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr6:37402200-37403400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:37402200-37403400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:37402200-37403400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:37402200-37403400	Enhancers	Primary T cells fromperipheralblood	blood
38	chr6:37402200-37403400	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr6:37402200-37403400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:37402200-37403400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:37402200-37403400	Enhancers	Liver	Liver
42	chr6:37402200-37403400	Weak transcription	Fetal Intestine Large	intestine
43	chr6:37402200-37403400	Weak transcription	Gastric	stomach
44	chr6:37402200-37403400	Weak transcription	Spleen	Spleen
45	chr6:37402200-37403400	Weak transcription	HSMM	muscle
46	chr6:37402200-37403400	Enhancers	Osteobl	bone
47	chr6:37402200-37403600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:37402200-37403600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr6:37402200-37403600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr6:37402200-37403600	Weak transcription	Primary hematopoietic stem cells	blood

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