Variant report

Variant	rs1970848
Chromosome Location	chr11:46157468-46157469
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10769187	0.92[EUR][1000 genomes]
rs11038774	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11038775	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11038780	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11038781	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11038783	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11601057	0.94[EUR][1000 genomes]
rs12287430	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7118159	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7120013	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7924340	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7950474	0.95[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46152800-46158200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:46156200-46158400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:46156400-46158800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:46156600-46158200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:46156600-46158400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:46156800-46158400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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