Variant report

Variant	rs1972081
Chromosome Location	chr11:24658833-24658834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10767226	0.86[ASN][1000 genomes]
rs11028072	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1319364	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1396841	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2403970	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2403972	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3942727	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4923202	0.86[ASN][1000 genomes]
rs906882	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3457997	chr11:24658231-24664462	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3457964	chr11:24658280-24664434	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv436133	chr11:24658285-24664383	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv3458008	chr11:24658305-24664379	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3457986	chr11:24658356-24664354	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3458019	chr11:24658370-24664350	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
9	esv3457975	chr11:24658371-24664423	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv16094	chr11:24658410-24664318	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv1811000	chr11:24658441-24664315	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv1809168	chr11:24658641-24664115	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
13	esv1808819	chr11:24658641-24664611	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24657200-24659600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:24658000-24659000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:24658000-24659200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:24658600-24659000	Weak transcription	Hela-S3	cervix
5	chr11:24658800-24659600	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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