Variant report

Variant	rs3942727
Chromosome Location	chr11:24658288-24658289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11028072	0.84[EUR][1000 genomes]
rs1319364	0.82[EUR][1000 genomes]
rs1396841	0.82[EUR][1000 genomes]
rs1972081	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2403970	0.84[EUR][1000 genomes]
rs2403972	0.84[EUR][1000 genomes]
rs906882	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3457997	chr11:24658231-24664462	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3457964	chr11:24658280-24664434	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv436133	chr11:24658285-24664383	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24656400-24658600	Enhancers	Hela-S3	cervix
2	chr11:24657200-24658400	Enhancers	NHEK	skin
3	chr11:24657200-24659600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:24658000-24659000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:24658000-24659200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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