Variant report
| Variant | rs1972181 |
|---|---|
| Chromosome Location | chr22:32823835-32823836 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000100150 | Chromatin interaction |
| ENSG00000252909 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12530 | 1.00[AFR][1000 genomes] |
| rs28640241 | 1.00[AFR][1000 genomes] |
| rs5754074 | 1.00[AFR][1000 genomes] |
| rs5994568 | 1.00[EUR][1000 genomes] |
| rs73166393 | 1.00[AFR][1000 genomes] |
| rs73168721 | 1.00[AFR][1000 genomes] |
| rs73168729 | 1.00[AFR][1000 genomes] |
| rs73170329 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs734809 | 0.89[AFR][1000 genomes] |
| rs9606942 | 1.00[AFR][1000 genomes] |
| rs9606944 | 1.00[AFR][1000 genomes] |
| rs9606945 | 1.00[AFR][1000 genomes] |
| rs9606947 | 1.00[AFR][1000 genomes] |
| rs9606950 | 1.00[AFR][1000 genomes] |
| rs9606952 | 0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9606953 | 0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9609523 | 1.00[AFR][1000 genomes] |
| rs9609527 | 1.00[AFR][1000 genomes] |
| rs9609529 | 1.00[AFR][1000 genomes] |
| rs9609530 | 1.00[AFR][1000 genomes] |
| rs9609531 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv459874 | chr22:32574274-32866934 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 2 | nsv588895 | chr22:32574274-32866934 | Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 3 | nsv1064737 | chr22:32603912-32829725 | Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 38 gene(s) | inside rSNPs | diseases |
| 4 | nsv1055701 | chr22:32806595-32845403 | Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive region | 21 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
