Variant report

Variant	rs28640241
Chromosome Location	chr22:32813555-32813556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32807783..32810463-chr22:32811648..32815260,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100220	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11703151	1.00[ASN][1000 genomes]
rs11703157	1.00[ASN][1000 genomes]
rs11703361	1.00[ASN][1000 genomes]
rs11704047	1.00[ASN][1000 genomes]
rs11704805	1.00[ASN][1000 genomes]
rs11705134	1.00[ASN][1000 genomes]
rs12166221	1.00[ASN][1000 genomes]
rs12166224	1.00[ASN][1000 genomes]
rs12166227	1.00[ASN][1000 genomes]
rs12530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16990574	1.00[ASN][1000 genomes]
rs17691853	1.00[ASN][1000 genomes]
rs17771806	1.00[ASN][1000 genomes]
rs1972181	1.00[AFR][1000 genomes]
rs2710368	1.00[ASN][1000 genomes]
rs28664874	1.00[ASN][1000 genomes]
rs34758535	1.00[ASN][1000 genomes]
rs5754074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs5994568	1.00[ASN][1000 genomes]
rs5994580	1.00[ASN][1000 genomes]
rs5998523	1.00[ASN][1000 genomes]
rs61741510	1.00[ASN][1000 genomes]
rs62232667	1.00[ASN][1000 genomes]
rs62232669	1.00[ASN][1000 genomes]
rs62232670	1.00[ASN][1000 genomes]
rs62232671	1.00[ASN][1000 genomes]
rs62232672	1.00[ASN][1000 genomes]
rs62241172	1.00[ASN][1000 genomes]
rs62241174	1.00[ASN][1000 genomes]
rs62241175	1.00[ASN][1000 genomes]
rs62241176	1.00[ASN][1000 genomes]
rs62241181	1.00[ASN][1000 genomes]
rs62241183	1.00[ASN][1000 genomes]
rs62241249	1.00[ASN][1000 genomes]
rs62241250	1.00[ASN][1000 genomes]
rs62241251	1.00[ASN][1000 genomes]
rs62241252	1.00[ASN][1000 genomes]
rs62241253	1.00[ASN][1000 genomes]
rs62241256	1.00[ASN][1000 genomes]
rs62241257	1.00[ASN][1000 genomes]
rs62241860	1.00[ASN][1000 genomes]
rs62241865	1.00[ASN][1000 genomes]
rs710175	1.00[ASN][1000 genomes]
rs73166393	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73168721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73168729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73170329	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73170376	1.00[ASN][1000 genomes]
rs73170400	1.00[ASN][1000 genomes]
rs734809	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8135445	1.00[ASN][1000 genomes]
rs8142304	1.00[ASN][1000 genomes]
rs8142460	1.00[ASN][1000 genomes]
rs9606942	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9606944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9606945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9606947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9606950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9606952	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9606953	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9609523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9609527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9609529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9609530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9609531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9621472	1.00[ASN][1000 genomes]
rs9621473	1.00[ASN][1000 genomes]
rs9621476	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459874	chr22:32574274-32866934	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv588895	chr22:32574274-32866934	Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv1064737	chr22:32603912-32829725	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1066118	chr22:32779078-32815334	Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1055701	chr22:32806595-32845403	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32808200-32818000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr22:32808400-32818000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:32809000-32814000	Weak transcription	GM12878-XiMat	blood
4	chr22:32809000-32817600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr22:32810200-32817000	Weak transcription	Liver	Liver

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