Variant report

Variant	rs73170376
Chromosome Location	chr22:32876534-32876535
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	22:32012966-32043914..22:32876067-32877399	GM12878	blood:
2	22:32264718-32278135..22:32876067-32877399	GM12878	blood:
3	22:31803954-31807204..22:32876067-32877399	GM12878	blood:
4	chr22:32875068..32878003-chr22:32885143..32887557,3	K562	blood:
5	chr22:32869625..32873110-chr22:32875948..32879908,5	MCF-7	breast:
6	chr22:32868328..32871434-chr22:32875720..32877967,3	K562	blood:
7	chr22:32873467..32875049-chr22:32876093..32878463,2	K562	blood:
8	22:32053085-32061138..22:32876067-32877399	GM12878	blood:
9	chr22:32807171..32809514-chr22:32875611..32878103,2	MCF-7	breast:
10	chr22:32876310..32879120-chr22:32908338..32911265,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000100225	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000100220	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11538371	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11703151	1.00[ASN][1000 genomes]
rs11703157	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703361	1.00[ASN][1000 genomes]
rs11704047	1.00[ASN][1000 genomes]
rs11704805	1.00[ASN][1000 genomes]
rs11705134	1.00[ASN][1000 genomes]
rs11705637	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12166221	1.00[ASN][1000 genomes]
rs12166224	1.00[ASN][1000 genomes]
rs12166227	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16990574	1.00[ASN][1000 genomes]
rs17691853	1.00[ASN][1000 genomes]
rs17771806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2710368	1.00[ASN][1000 genomes]
rs28640241	1.00[ASN][1000 genomes]
rs28664874	1.00[ASN][1000 genomes]
rs34758535	1.00[ASN][1000 genomes]
rs5994568	1.00[ASN][1000 genomes]
rs5994580	1.00[ASN][1000 genomes]
rs5998523	1.00[ASN][1000 genomes]
rs61741510	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62232667	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62232669	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62232670	1.00[ASN][1000 genomes]
rs62232671	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62232672	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241172	1.00[ASN][1000 genomes]
rs62241174	1.00[ASN][1000 genomes]
rs62241175	1.00[ASN][1000 genomes]
rs62241176	1.00[ASN][1000 genomes]
rs62241181	1.00[ASN][1000 genomes]
rs62241183	1.00[ASN][1000 genomes]
rs62241249	1.00[ASN][1000 genomes]
rs62241250	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241251	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241252	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241256	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241257	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241860	1.00[ASN][1000 genomes]
rs62241865	1.00[ASN][1000 genomes]
rs710175	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170329	1.00[ASN][1000 genomes]
rs73170400	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8135445	1.00[ASN][1000 genomes]
rs8142304	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8142460	1.00[ASN][1000 genomes]
rs9606952	1.00[ASN][1000 genomes]
rs9606953	1.00[ASN][1000 genomes]
rs9621472	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621473	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621476	1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32872000-32878800	Weak transcription	Spleen	Spleen
2	chr22:32872000-32881000	Weak transcription	Esophagus	oesophagus
3	chr22:32872000-32881000	Weak transcription	Lung	lung
4	chr22:32872000-32881400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr22:32872000-32884400	Weak transcription	Pancreas	Pancrea
6	chr22:32872000-32884800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr22:32872000-32889000	Weak transcription	Gastric	stomach
8	chr22:32872000-32891000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr22:32872200-32877600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr22:32872200-32880000	Weak transcription	Placenta	Placenta
11	chr22:32872200-32882600	Weak transcription	Colonic Mucosa	Colon
12	chr22:32872200-32885200	Weak transcription	Stomach Mucosa	stomach
13	chr22:32872200-32886200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr22:32872200-32889000	Weak transcription	Fetal Brain Male	brain
15	chr22:32872200-32898200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr22:32872200-32898400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr22:32872200-32899600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr22:32872400-32881000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr22:32872400-32881000	Weak transcription	HSMMtube	muscle
20	chr22:32872400-32881200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr22:32872600-32880800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr22:32872600-32881000	Weak transcription	Fetal Brain Female	brain
23	chr22:32873000-32880000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr22:32873000-32880000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr22:32873000-32880600	Weak transcription	NH-A	brain
26	chr22:32873000-32882200	Weak transcription	Fetal Stomach	stomach
27	chr22:32873000-32889600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr22:32873000-32898000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr22:32873200-32877800	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr22:32873200-32878200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr22:32873200-32879600	Weak transcription	HUVEC	blood vessel
32	chr22:32873200-32879600	Weak transcription	NHDF-Ad	bronchial
33	chr22:32873200-32879800	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr22:32873200-32880000	Weak transcription	Osteobl	bone
35	chr22:32873200-32880400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr22:32873200-32881000	Weak transcription	A549	lung
37	chr22:32873200-32881600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr22:32873200-32883400	Weak transcription	NHLF	lung
39	chr22:32873600-32879800	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr22:32873600-32881200	Weak transcription	Brain Germinal Matrix	brain
41	chr22:32873800-32877800	Weak transcription	Fetal Heart	heart
42	chr22:32874000-32877600	Weak transcription	Hela-S3	cervix
43	chr22:32874000-32878400	Weak transcription	HMEC	breast
44	chr22:32874000-32878600	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr22:32874200-32878800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr22:32874200-32878800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr22:32874200-32880200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr22:32874200-32880200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
49	chr22:32874200-32881000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr22:32874200-32882200	Weak transcription	Fetal Intestine Small	intestine

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