Variant report

Variant	rs8135445
Chromosome Location	chr22:32829945-32829946
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	22:32012966-32043914..22:32827003-32830758	K562	blood:
2	22:32544939-32549151..22:32827003-32830758	Hela-S3	cervix:
3	22:32827003-32830758..22:32868055-32872511	Hela-S3	cervix:
4	22:32827003-32830758..22:32860159-32865649	K562	blood:
5	22:32764253-32784733..22:32827003-32830758	K562	blood:
6	22:32053085-32061138..22:32827003-32830758	GM12878	blood:
7	22:32740683-32750950..22:32827003-32830758	K562	blood:
8	22:32188129-32210582..22:32827003-32830758	GM12878	blood:
9	22:32827003-32830758..22:33262063-33266567	Hela-S3	cervix:
10	22:31961151-31976153..22:32827003-32830758	K562	blood:
11	22:32170492-32188129..22:32827003-32830758	GM12878	blood:
12	22:32750950-32761732..22:32827003-32830758	K562	blood:
13	22:31864703-31891033..22:32827003-32830758	K562	blood:
14	22:32477762-32487457..22:32827003-32830758	K562	blood:
15	22:32827003-32830758..22:33452523-33459358	Hela-S3	cervix:
16	22:32827003-32830758..22:33190123-33206921	K562	blood:

No data

Variant related genes	Relation type
ENSG00000184459	Chromatin interaction
ENSG00000241954	Chromatin interaction
ENSG00000100225	Chromatin interaction
ENSG00000243519	Chromatin interaction
ENSG00000232218	Chromatin interaction
ENSG00000199248	Chromatin interaction
ENSG00000128276	Chromatin interaction
ENSG00000100170	Chromatin interaction
ENSG00000230736	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000205853	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000271093	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000205856	Chromatin interaction
ENSG00000100234	Chromatin interaction
ENSG00000100150	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11703151	1.00[ASN][1000 genomes]
rs11703157	1.00[ASN][1000 genomes]
rs11703361	1.00[ASN][1000 genomes]
rs11704047	1.00[ASN][1000 genomes]
rs11704805	1.00[ASN][1000 genomes]
rs11705134	1.00[ASN][1000 genomes]
rs12166221	1.00[ASN][1000 genomes]
rs12166224	1.00[ASN][1000 genomes]
rs12166227	1.00[ASN][1000 genomes]
rs16990574	1.00[ASN][1000 genomes]
rs17691853	1.00[ASN][1000 genomes]
rs17771806	1.00[ASN][1000 genomes]
rs2710368	1.00[ASN][1000 genomes]
rs28640241	1.00[ASN][1000 genomes]
rs28664874	1.00[ASN][1000 genomes]
rs34758535	1.00[ASN][1000 genomes]
rs5994568	1.00[ASN][1000 genomes]
rs5994580	1.00[ASN][1000 genomes]
rs5998523	1.00[ASN][1000 genomes]
rs61741510	1.00[ASN][1000 genomes]
rs62232667	1.00[ASN][1000 genomes]
rs62232669	1.00[ASN][1000 genomes]
rs62232670	1.00[ASN][1000 genomes]
rs62232671	1.00[ASN][1000 genomes]
rs62232672	1.00[ASN][1000 genomes]
rs62241172	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241174	1.00[ASN][1000 genomes]
rs62241175	1.00[ASN][1000 genomes]
rs62241176	1.00[ASN][1000 genomes]
rs62241181	1.00[ASN][1000 genomes]
rs62241183	1.00[ASN][1000 genomes]
rs62241249	1.00[ASN][1000 genomes]
rs62241250	1.00[ASN][1000 genomes]
rs62241251	1.00[ASN][1000 genomes]
rs62241252	1.00[ASN][1000 genomes]
rs62241253	1.00[ASN][1000 genomes]
rs62241256	1.00[ASN][1000 genomes]
rs62241257	1.00[ASN][1000 genomes]
rs62241860	1.00[ASN][1000 genomes]
rs62241865	1.00[ASN][1000 genomes]
rs710175	1.00[ASN][1000 genomes]
rs73170329	1.00[ASN][1000 genomes]
rs73170376	1.00[ASN][1000 genomes]
rs73170400	1.00[ASN][1000 genomes]
rs8142304	1.00[ASN][1000 genomes]
rs8142460	1.00[ASN][1000 genomes]
rs9606952	1.00[ASN][1000 genomes]
rs9606953	1.00[ASN][1000 genomes]
rs9621472	1.00[ASN][1000 genomes]
rs9621473	1.00[ASN][1000 genomes]
rs9621476	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459874	chr22:32574274-32866934	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv588895	chr22:32574274-32866934	Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv1055701	chr22:32806595-32845403	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
4	esv3349751	chr22:32829302-32831500	Enhancers	Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32829400-32830000	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links