Variant report

Variant	rs710175
Chromosome Location	chr22:32909401-32909402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32906321-32912852..22:33339333-33353583	Hela-S3	cervix:
2	22:32906321-32912852..22:33452523-33459358	Hela-S3	cervix:
3	22:32264718-32278135..22:32906321-32912852	GM12878	blood:
4	chr22:32876310..32879120-chr22:32908338..32911265,2	K562	blood:
5	22:32053085-32061138..22:32906321-32912852	Hela-S3	cervix:
6	22:32906321-32912852..22:33262063-33266567	K562	blood:

Variant related genes	Relation type
ENSG00000241878	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000185666	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11703151	1.00[ASN][1000 genomes]
rs11703157	1.00[ASN][1000 genomes]
rs11703361	1.00[ASN][1000 genomes]
rs11704047	1.00[ASN][1000 genomes]
rs11704805	1.00[ASN][1000 genomes]
rs11705134	1.00[ASN][1000 genomes]
rs12166221	1.00[ASN][1000 genomes]
rs12166224	1.00[ASN][1000 genomes]
rs12166227	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16990574	1.00[ASN][1000 genomes]
rs17691853	1.00[ASN][1000 genomes]
rs17771806	0.84[CEU][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2710368	0.94[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2710369	0.94[CEU][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap]
rs28640241	1.00[ASN][1000 genomes]
rs28664874	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34758535	1.00[ASN][1000 genomes]
rs4257479	0.89[YRI][hapmap]
rs5994568	1.00[ASN][1000 genomes]
rs5994580	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998523	1.00[ASW][hapmap];0.94[CEU][hapmap];0.83[GIH][hapmap];0.85[LWK][hapmap];0.92[MEX][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61741510	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62232667	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62232669	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62232670	1.00[ASN][1000 genomes]
rs62232671	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62232672	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241172	1.00[ASN][1000 genomes]
rs62241174	1.00[ASN][1000 genomes]
rs62241175	1.00[ASN][1000 genomes]
rs62241176	1.00[ASN][1000 genomes]
rs62241181	1.00[ASN][1000 genomes]
rs62241183	1.00[ASN][1000 genomes]
rs62241249	1.00[ASN][1000 genomes]
rs62241250	1.00[ASN][1000 genomes]
rs62241251	1.00[ASN][1000 genomes]
rs62241252	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241253	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241256	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241257	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241860	1.00[ASN][1000 genomes]
rs62241865	1.00[ASN][1000 genomes]
rs73170329	1.00[ASN][1000 genomes]
rs73170376	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170400	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8135445	1.00[ASN][1000 genomes]
rs8142304	0.83[GIH][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8142460	1.00[ASN][1000 genomes]
rs9606952	1.00[ASN][1000 genomes]
rs9606953	1.00[ASN][1000 genomes]
rs9621472	0.83[GIH][hapmap];0.91[MEX][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621473	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621476	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs710175	SEC14L4	cis	parietal	SCAN

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32894400-32913200	Weak transcription	Fetal Brain Female	brain
2	chr22:32894800-32912000	Weak transcription	Fetal Intestine Small	intestine
3	chr22:32894800-32914200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr22:32895200-32909600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr22:32895200-32910000	Weak transcription	HSMMtube	muscle
6	chr22:32895200-32913600	Weak transcription	Brain Germinal Matrix	brain
7	chr22:32895200-32918400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr22:32895400-32914000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr22:32895800-32913200	Weak transcription	Placenta	Placenta
10	chr22:32896000-32913200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr22:32896400-32909600	Weak transcription	Lung	lung
12	chr22:32897200-32914200	Weak transcription	Primary T cells from cord blood	blood
13	chr22:32898600-32909800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr22:32898600-32913800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr22:32898600-32928000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr22:32898800-32909600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr22:32898800-32927200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr22:32904000-32924400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr22:32905400-32918600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr22:32906600-32910600	Enhancers	HepG2	liver
21	chr22:32906800-32913000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr22:32907400-32909600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr22:32907600-32910800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr22:32907600-32912800	Weak transcription	Brain Anterior Caudate	brain
25	chr22:32907600-32913600	Weak transcription	Adipose Nuclei	Adipose
26	chr22:32907800-32912800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr22:32907800-32913200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr22:32907800-32913800	Weak transcription	Fetal Stomach	stomach
29	chr22:32908000-32912800	Weak transcription	Brain Hippocampus Middle	brain
30	chr22:32908000-32913000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr22:32908000-32913800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr22:32908000-32916600	Weak transcription	Brain Substantia Nigra	brain
33	chr22:32908600-32910200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr22:32908600-32911200	Weak transcription	Liver	Liver
35	chr22:32908800-32910200	Weak transcription	Fetal Muscle Leg	muscle
36	chr22:32908800-32914400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr22:32909200-32910200	Strong transcription	Spleen	Spleen
38	chr22:32909200-32910400	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr22:32909200-32910400	Strong transcription	Brain Inferior Temporal Lobe	brain
40	chr22:32909400-32909600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr22:32909400-32910200	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr22:32909400-32910400	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr22:32909400-32910600	Strong transcription	Brain Angular Gyrus	brain

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