Variant report

Variant	rs62241175
Chromosome Location	chr22:32841310-32841311
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:32839780..32841895-chr22:32843055..32844709,2	MCF-7	breast:
2	chr22:32840482..32843271-chr22:32863518..32866451,2	K562	blood:
3	chr22:32839660..32842099-chr22:32867948..32870781,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100225	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11703151	1.00[ASN][1000 genomes]
rs11703157	1.00[ASN][1000 genomes]
rs11703361	1.00[ASN][1000 genomes]
rs11704047	1.00[ASN][1000 genomes]
rs11704805	1.00[ASN][1000 genomes]
rs11705134	1.00[ASN][1000 genomes]
rs12166221	1.00[ASN][1000 genomes]
rs12166224	1.00[ASN][1000 genomes]
rs12166227	1.00[ASN][1000 genomes]
rs16990574	1.00[ASN][1000 genomes]
rs17691853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17771806	1.00[ASN][1000 genomes]
rs2710368	1.00[ASN][1000 genomes]
rs28640241	1.00[ASN][1000 genomes]
rs28664874	1.00[ASN][1000 genomes]
rs34758535	1.00[ASN][1000 genomes]
rs5994568	1.00[ASN][1000 genomes]
rs5994580	1.00[ASN][1000 genomes]
rs5998523	1.00[ASN][1000 genomes]
rs61741510	1.00[ASN][1000 genomes]
rs62232667	1.00[ASN][1000 genomes]
rs62232669	1.00[ASN][1000 genomes]
rs62232670	1.00[ASN][1000 genomes]
rs62232671	1.00[ASN][1000 genomes]
rs62232672	1.00[ASN][1000 genomes]
rs62241172	1.00[ASN][1000 genomes]
rs62241174	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241181	1.00[ASN][1000 genomes]
rs62241183	1.00[ASN][1000 genomes]
rs62241249	1.00[ASN][1000 genomes]
rs62241250	1.00[ASN][1000 genomes]
rs62241251	1.00[ASN][1000 genomes]
rs62241252	1.00[ASN][1000 genomes]
rs62241253	1.00[ASN][1000 genomes]
rs62241256	1.00[ASN][1000 genomes]
rs62241257	1.00[ASN][1000 genomes]
rs62241860	1.00[ASN][1000 genomes]
rs62241865	1.00[ASN][1000 genomes]
rs710175	1.00[ASN][1000 genomes]
rs73170329	1.00[ASN][1000 genomes]
rs73170376	1.00[ASN][1000 genomes]
rs73170400	1.00[ASN][1000 genomes]
rs8135445	1.00[ASN][1000 genomes]
rs8142304	1.00[ASN][1000 genomes]
rs8142460	1.00[ASN][1000 genomes]
rs9606952	1.00[ASN][1000 genomes]
rs9606953	1.00[ASN][1000 genomes]
rs9621472	1.00[ASN][1000 genomes]
rs9621473	1.00[ASN][1000 genomes]
rs9621476	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459874	chr22:32574274-32866934	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv588895	chr22:32574274-32866934	Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv1055701	chr22:32806595-32845403	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links