Variant report

Variant	rs62232672
Chromosome Location	chr22:32905973-32905974
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32053085-32061138..22:32900053-32906321	Hela-S3	cervix:
2	22:32188129-32210582..22:32900053-32906321	Hela-S3	cervix:
3	22:32868055-32872511..22:32900053-32906321	Hela-S3	cervix:
4	chr22:32806976..32809452-chr22:32905844..32907741,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FBXO7-1	chr22:32905862-32907788	ENSG00000249905

Variant related genes	Relation type
ENSG00000241878	Chromatin interaction
ENSG00000100220	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000100225	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11703151	1.00[ASN][1000 genomes]
rs11703157	1.00[ASN][1000 genomes]
rs11703361	1.00[ASN][1000 genomes]
rs11704047	1.00[ASN][1000 genomes]
rs11704805	1.00[ASN][1000 genomes]
rs11705134	1.00[ASN][1000 genomes]
rs11705637	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12166221	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166224	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166227	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16990574	1.00[ASN][1000 genomes]
rs17691853	1.00[ASN][1000 genomes]
rs17771806	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2710368	1.00[ASN][1000 genomes]
rs28640241	1.00[ASN][1000 genomes]
rs28664874	1.00[ASN][1000 genomes]
rs34758535	1.00[ASN][1000 genomes]
rs5994568	1.00[ASN][1000 genomes]
rs5994580	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998523	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61741510	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62232667	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62232668	0.86[EUR][1000 genomes]
rs62232669	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62232670	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62232671	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241172	1.00[ASN][1000 genomes]
rs62241174	1.00[ASN][1000 genomes]
rs62241175	1.00[ASN][1000 genomes]
rs62241176	1.00[ASN][1000 genomes]
rs62241181	1.00[ASN][1000 genomes]
rs62241183	1.00[ASN][1000 genomes]
rs62241249	1.00[ASN][1000 genomes]
rs62241250	1.00[ASN][1000 genomes]
rs62241251	1.00[ASN][1000 genomes]
rs62241252	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241253	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241256	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241257	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241860	1.00[ASN][1000 genomes]
rs62241865	1.00[ASN][1000 genomes]
rs710175	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170329	1.00[ASN][1000 genomes]
rs73170376	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170400	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8135445	1.00[ASN][1000 genomes]
rs8142304	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8142460	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9606952	1.00[ASN][1000 genomes]
rs9606953	1.00[ASN][1000 genomes]
rs9621472	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621473	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621476	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32889800-32908800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr22:32892200-32909400	Weak transcription	Aorta	Aorta
3	chr22:32894400-32913200	Weak transcription	Fetal Brain Female	brain
4	chr22:32894600-32907200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr22:32894800-32906600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr22:32894800-32912000	Weak transcription	Fetal Intestine Small	intestine
7	chr22:32894800-32914200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr22:32895200-32906200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr22:32895200-32906600	Weak transcription	HepG2	liver
10	chr22:32895200-32907200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr22:32895200-32909200	Weak transcription	Spleen	Spleen
12	chr22:32895200-32909600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr22:32895200-32910000	Weak transcription	HSMMtube	muscle
14	chr22:32895200-32913600	Weak transcription	Brain Germinal Matrix	brain
15	chr22:32895200-32918400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr22:32895400-32907200	Weak transcription	Fetal Stomach	stomach
17	chr22:32895400-32914000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr22:32895800-32913200	Weak transcription	Placenta	Placenta
19	chr22:32896000-32906000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr22:32896000-32913200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr22:32896400-32907000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr22:32896400-32907600	Weak transcription	Liver	Liver
23	chr22:32896400-32909600	Weak transcription	Lung	lung
24	chr22:32896600-32906800	Weak transcription	Primary B cells from cord blood	blood
25	chr22:32897200-32907200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr22:32897200-32914200	Weak transcription	Primary T cells from cord blood	blood
27	chr22:32898600-32906600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr22:32898600-32906800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr22:32898600-32909800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr22:32898600-32913800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr22:32898600-32928000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr22:32898800-32906800	Weak transcription	Fetal Muscle Leg	muscle
33	chr22:32898800-32909200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr22:32898800-32909600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr22:32898800-32927200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr22:32900000-32909400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr22:32904000-32924400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr22:32904600-32906400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr22:32904600-32907200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr22:32904800-32906000	Weak transcription	Hela-S3	cervix
41	chr22:32905000-32906200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr22:32905000-32907200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr22:32905000-32907200	Weak transcription	Brain Angular Gyrus	brain
44	chr22:32905000-32907400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr22:32905000-32909400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr22:32905000-32909400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr22:32905200-32906600	Enhancers	Brain Anterior Caudate	brain
48	chr22:32905200-32907800	Enhancers	Brain Cingulate Gyrus	brain
49	chr22:32905200-32907800	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr22:32905200-32908000	Enhancers	Brain Substantia Nigra	brain

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