Variant report
| Variant | rs11704047 |
|---|---|
| Chromosome Location | chr22:32858194-32858195 |
| allele | A/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:14)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:14 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 22:32170492-32188129..22:32846948-32860159 | K562 | blood: | |
| 2 | 22:32012966-32043914..22:32846948-32860159 | K562 | blood: | |
| 3 | 22:32846948-32860159..22:33190123-33206921 | K562 | blood: | |
| 4 | 22:32102727-32109893..22:32846948-32860159 | GM12878 | blood: | |
| 5 | 22:32264718-32278135..22:32846948-32860159 | GM12878 | blood: | |
| 6 | 22:32342898-32343477..22:32846948-32860159 | GM12878 | blood: | |
| 7 | 22:32188129-32210582..22:32846948-32860159 | K562 | blood: | |
| 8 | 22:32740683-32750950..22:32846948-32860159 | K562 | blood: | |
| 9 | 22:32292186-32294405..22:32846948-32860159 | Hela-S3 | cervix: | |
| 10 | chr22:32857701..32860876-chr22:32869435..32872164,3 | K562 | blood: | |
| 11 | 22:32846948-32860159..22:33339333-33353583 | K562 | blood: | |
| 12 | 22:32846948-32860159..22:33262063-33266567 | Hela-S3 | cervix: | |
| 13 | 22:32477762-32487457..22:32846948-32860159 | Hela-S3 | cervix: | |
| 14 | 22:32846948-32860159..22:33452523-33459358 | Hela-S3 | cervix: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000183530 | Chromatin interaction |
| ENSG00000100225 | Chromatin interaction |
| ENSG00000128276 | Chromatin interaction |
| ENSG00000100234 | Chromatin interaction |
| ENSG00000185666 | Chromatin interaction |
| ENSG00000241878 | Chromatin interaction |
| ENSG00000128245 | Chromatin interaction |
| ENSG00000100170 | Chromatin interaction |
| ENSG00000100150 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:52)
| rs_ID | r2[population] |
|---|---|
| rs11538371 | 0.81[AMR][1000 genomes] |
| rs11703151 | 1.00[ASN][1000 genomes] |
| rs11703157 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11703361 | 1.00[ASN][1000 genomes] |
| rs11704805 | 1.00[ASN][1000 genomes] |
| rs11705134 | 1.00[ASN][1000 genomes] |
| rs12166221 | 1.00[ASN][1000 genomes] |
| rs12166224 | 1.00[ASN][1000 genomes] |
| rs12166227 | 1.00[ASN][1000 genomes] |
| rs16990574 | 1.00[ASN][1000 genomes] |
| rs17691853 | 1.00[ASN][1000 genomes] |
| rs17771806 | 1.00[ASN][1000 genomes] |
| rs2710368 | 1.00[ASN][1000 genomes] |
| rs28640241 | 1.00[ASN][1000 genomes] |
| rs28664874 | 1.00[ASN][1000 genomes] |
| rs34758535 | 1.00[ASN][1000 genomes] |
| rs5994568 | 1.00[ASN][1000 genomes] |
| rs5994580 | 1.00[ASN][1000 genomes] |
| rs5998523 | 1.00[ASN][1000 genomes] |
| rs61741510 | 1.00[ASN][1000 genomes] |
| rs62232667 | 1.00[ASN][1000 genomes] |
| rs62232669 | 1.00[ASN][1000 genomes] |
| rs62232670 | 1.00[ASN][1000 genomes] |
| rs62232671 | 1.00[ASN][1000 genomes] |
| rs62232672 | 1.00[ASN][1000 genomes] |
| rs62241172 | 1.00[ASN][1000 genomes] |
| rs62241174 | 1.00[ASN][1000 genomes] |
| rs62241175 | 1.00[ASN][1000 genomes] |
| rs62241176 | 1.00[ASN][1000 genomes] |
| rs62241181 | 1.00[ASN][1000 genomes] |
| rs62241183 | 1.00[ASN][1000 genomes] |
| rs62241249 | 1.00[ASN][1000 genomes] |
| rs62241250 | 0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62241251 | 0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62241252 | 1.00[ASN][1000 genomes] |
| rs62241253 | 1.00[ASN][1000 genomes] |
| rs62241256 | 1.00[ASN][1000 genomes] |
| rs62241257 | 1.00[ASN][1000 genomes] |
| rs62241860 | 1.00[ASN][1000 genomes] |
| rs62241865 | 1.00[ASN][1000 genomes] |
| rs710175 | 1.00[ASN][1000 genomes] |
| rs73170329 | 1.00[ASN][1000 genomes] |
| rs73170376 | 1.00[ASN][1000 genomes] |
| rs73170400 | 1.00[ASN][1000 genomes] |
| rs8135445 | 1.00[ASN][1000 genomes] |
| rs8142304 | 1.00[ASN][1000 genomes] |
| rs8142460 | 1.00[ASN][1000 genomes] |
| rs9606952 | 1.00[ASN][1000 genomes] |
| rs9606953 | 1.00[ASN][1000 genomes] |
| rs9621472 | 1.00[ASN][1000 genomes] |
| rs9621473 | 1.00[ASN][1000 genomes] |
| rs9621476 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv459874 | chr22:32574274-32866934 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 2 | nsv588895 | chr22:32574274-32866934 | Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 3 | nsv520883 | chr22:32857824-32858428 | Inactive region | Chromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
