Variant report

Variant	rs73170400
Chromosome Location	chr22:32895077-32895078
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32889404-32895878..22:33262063-33266567	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000185666	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11538371	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11703151	1.00[ASN][1000 genomes]
rs11703157	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703361	1.00[ASN][1000 genomes]
rs11704047	1.00[ASN][1000 genomes]
rs11704805	1.00[ASN][1000 genomes]
rs11705134	1.00[ASN][1000 genomes]
rs11705637	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12166221	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166224	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166227	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16990574	1.00[ASN][1000 genomes]
rs17691853	1.00[ASN][1000 genomes]
rs17771806	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2710368	1.00[ASN][1000 genomes]
rs28640241	1.00[ASN][1000 genomes]
rs28664874	1.00[ASN][1000 genomes]
rs34758535	1.00[ASN][1000 genomes]
rs5994568	1.00[ASN][1000 genomes]
rs5994580	1.00[ASN][1000 genomes]
rs5998523	1.00[ASN][1000 genomes]
rs61741510	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62232667	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62232668	0.82[EUR][1000 genomes]
rs62232669	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62232670	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62232671	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62232672	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241172	1.00[ASN][1000 genomes]
rs62241174	1.00[ASN][1000 genomes]
rs62241175	1.00[ASN][1000 genomes]
rs62241176	1.00[ASN][1000 genomes]
rs62241181	1.00[ASN][1000 genomes]
rs62241183	1.00[ASN][1000 genomes]
rs62241249	1.00[ASN][1000 genomes]
rs62241250	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241251	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241252	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241253	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62241860	1.00[ASN][1000 genomes]
rs62241865	1.00[ASN][1000 genomes]
rs710175	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170329	1.00[ASN][1000 genomes]
rs73170376	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8135445	1.00[ASN][1000 genomes]
rs8142304	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8142460	1.00[ASN][1000 genomes]
rs9606952	1.00[ASN][1000 genomes]
rs9606953	1.00[ASN][1000 genomes]
rs9621472	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621473	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621476	1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32872200-32898200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr22:32872200-32898400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr22:32872200-32899600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr22:32873000-32898000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr22:32874800-32896000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr22:32874800-32896400	Strong transcription	Dnd41	blood
7	chr22:32876000-32896400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr22:32877000-32896400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr22:32877200-32898000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr22:32877800-32895400	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr22:32878200-32896600	Strong transcription	Primary B cells from cord blood	blood
12	chr22:32878800-32895200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr22:32878800-32895200	Strong transcription	Fetal Muscle Leg	muscle
14	chr22:32879200-32895400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr22:32879200-32896200	Strong transcription	Left Ventricle	heart
16	chr22:32879400-32895200	Strong transcription	HepG2	liver
17	chr22:32879400-32896000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr22:32879400-32896200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr22:32879400-32896600	Strong transcription	Duodenum Mucosa	Duodenum
20	chr22:32879600-32896000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr22:32879600-32896000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr22:32879600-32896600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr22:32879800-32895200	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr22:32879800-32895600	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr22:32879800-32896000	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr22:32879800-32896400	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr22:32879800-32896400	Strong transcription	GM12878-XiMat	blood
28	chr22:32879800-32896600	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr22:32880000-32895200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr22:32880000-32895400	Strong transcription	Stomach Smooth Muscle	stomach
31	chr22:32880000-32895800	Strong transcription	Placenta	Placenta
32	chr22:32880000-32896000	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr22:32880000-32896200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr22:32880000-32896200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr22:32880000-32896200	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr22:32880000-32896400	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr22:32880000-32896600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr22:32880200-32896400	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr22:32880600-32895200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr22:32881000-32896200	Strong transcription	HSMM	muscle
41	chr22:32882000-32896400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr22:32882200-32896600	Strong transcription	Osteobl	bone
43	chr22:32882400-32895200	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr22:32882600-32895200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr22:32882800-32895400	Strong transcription	NHDF-Ad	bronchial
46	chr22:32883200-32896400	Strong transcription	Adipose Nuclei	Adipose
47	chr22:32883400-32897200	Weak transcription	Psoas Muscle	Psoas
48	chr22:32884200-32895200	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr22:32884200-32896200	Strong transcription	Fetal Intestine Large	intestine
50	chr22:32884600-32896400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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