Variant report

Variant	rs1975327
Chromosome Location	chr15:73019391-73019392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73018422..73020271-chr15:73025051..73026725,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10152150	0.98[EUR][1000 genomes]
rs10519024	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11072386	0.98[EUR][1000 genomes]
rs11072388	1.00[EUR][1000 genomes]
rs12372979	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17753627	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17753768	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17826791	0.88[CEU][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17827419	0.94[EUR][1000 genomes]
rs2415167	0.98[EUR][1000 genomes]
rs34149613	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56300009	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7170250	0.88[EUR][1000 genomes]
rs74024330	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9806742	0.88[CEU][hapmap];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	esv3323697	chr15:73017124-73019672	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3332224	chr15:73017324-73019472	Strong transcription Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72979200-73023600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:72979200-73023600	Weak transcription	Lung	lung
3	chr15:72979400-73027200	Weak transcription	Aorta	Aorta
4	chr15:72979600-73023200	Weak transcription	Fetal Kidney	kidney
5	chr15:72979600-73026800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:72979800-73027400	Weak transcription	Hela-S3	cervix
7	chr15:72985200-73021000	Weak transcription	Fetal Intestine Small	intestine
8	chr15:72993000-73028800	Weak transcription	NHEK	skin
9	chr15:72999000-73020400	Weak transcription	NH-A	brain
10	chr15:72999000-73021800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:72999000-73044000	Weak transcription	Small Intestine	intestine
12	chr15:72999600-73027600	Weak transcription	NHLF	lung
13	chr15:73001200-73027600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:73001400-73020400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:73001400-73027400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr15:73001400-73027400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:73001400-73027600	Weak transcription	Right Ventricle	heart
18	chr15:73001800-73027200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:73001800-73027400	Weak transcription	K562	blood
20	chr15:73001800-73033200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr15:73002000-73054600	Weak transcription	Fetal Brain Male	brain
22	chr15:73002200-73023000	Weak transcription	Fetal Thymus	thymus
23	chr15:73002200-73026000	Weak transcription	Fetal Heart	heart
24	chr15:73002200-73028800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr15:73002400-73022800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr15:73002400-73028800	Weak transcription	Psoas Muscle	Psoas
27	chr15:73003000-73027400	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr15:73003000-73028800	Weak transcription	Dnd41	blood
29	chr15:73003000-73031400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:73003200-73027800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr15:73003200-73029000	Weak transcription	Esophagus	oesophagus
32	chr15:73003400-73023000	Weak transcription	Colonic Mucosa	Colon
33	chr15:73003400-73029000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr15:73003400-73044000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr15:73004000-73027400	Weak transcription	Gastric	stomach
36	chr15:73004200-73027200	Weak transcription	Spleen	Spleen
37	chr15:73004400-73028000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr15:73004600-73027800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:73004800-73022000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:73004800-73026200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr15:73005000-73027600	Weak transcription	NHDF-Ad	bronchial
42	chr15:73005000-73028600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr15:73005000-73031800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr15:73005200-73019400	Weak transcription	Brain Substantia Nigra	brain
45	chr15:73005800-73027400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:73006200-73027200	Weak transcription	Brain Germinal Matrix	brain
47	chr15:73006200-73027200	Weak transcription	Colon Smooth Muscle	Colon
48	chr15:73008000-73023200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:73008000-73023400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr15:73008000-73023600	Weak transcription	Brain Cingulate Gyrus	brain

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