Variant report

Variant	rs34149613
Chromosome Location	chr15:73044863-73044864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73041118..73044683-chr15:73044703..73047374,3	K562	blood:
2	chr15:73042845..73045045-chr15:73109930..73111869,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10152150	1.00[EUR][1000 genomes]
rs10519024	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11072386	1.00[EUR][1000 genomes]
rs11072388	0.98[EUR][1000 genomes]
rs12372979	0.91[EUR][1000 genomes]
rs17753627	0.91[EUR][1000 genomes]
rs17753768	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17826791	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17827419	0.92[EUR][1000 genomes]
rs1975327	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2415167	1.00[EUR][1000 genomes]
rs56300009	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7170250	0.87[EUR][1000 genomes]
rs74024330	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9806742	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73002000-73054600	Weak transcription	Fetal Brain Male	brain
2	chr15:73024400-73046800	Weak transcription	Fetal Kidney	kidney
3	chr15:73030400-73046000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:73030600-73058400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:73031600-73045000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:73033600-73047200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr15:73035800-73050600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:73041600-73047600	Weak transcription	Stomach Mucosa	stomach
9	chr15:73041600-73049800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:73041800-73049000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:73041800-73071000	Strong transcription	Liver	Liver
12	chr15:73042000-73048000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:73042200-73045800	Strong transcription	Rectal Smooth Muscle	rectum
14	chr15:73042200-73048800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:73042200-73049000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:73042200-73053800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:73042200-73055400	Strong transcription	Fetal Muscle Leg	muscle
18	chr15:73042200-73056200	Strong transcription	Thymus	Thymus
19	chr15:73042200-73058600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr15:73042200-73058600	Strong transcription	A549	lung
21	chr15:73042400-73049000	Strong transcription	Osteobl	bone
22	chr15:73042600-73045200	Strong transcription	NHDF-Ad	bronchial
23	chr15:73042800-73050000	Strong transcription	HSMM	muscle
24	chr15:73043200-73050400	Strong transcription	Colonic Mucosa	Colon
25	chr15:73043200-73053400	Strong transcription	GM12878-XiMat	blood
26	chr15:73043200-73053800	Strong transcription	Stomach Smooth Muscle	stomach
27	chr15:73043400-73045000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:73043400-73045000	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr15:73043400-73045600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr15:73043400-73046000	Strong transcription	NHEK	skin
31	chr15:73043400-73048400	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr15:73043400-73048600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:73043400-73049000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:73043400-73049400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:73043400-73049400	Strong transcription	Gastric	stomach
36	chr15:73043400-73050000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr15:73043400-73050000	Strong transcription	Brain Anterior Caudate	brain
38	chr15:73043400-73051000	Strong transcription	Esophagus	oesophagus
39	chr15:73043400-73051200	Strong transcription	Pancreas	Pancrea
40	chr15:73043400-73053600	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr15:73043400-73055200	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr15:73043400-73055800	Strong transcription	Fetal Stomach	stomach
43	chr15:73043400-73056200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr15:73043400-73056600	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr15:73043400-73056600	Strong transcription	Fetal Muscle Trunk	muscle
46	chr15:73043400-73056800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr15:73043400-73058800	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr15:73043400-73058800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr15:73043400-73059000	Strong transcription	Fetal Intestine Small	intestine
50	chr15:73043400-73059000	Strong transcription	Left Ventricle	heart

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