Variant report
| Variant | rs1977203 |
|---|---|
| Chromosome Location | chr6:49588339-49588340 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:49586413..49589219-chr6:49602189..49604724,3 | K562 | blood: | |
| 2 | chr6:49586668..49589445-chr6:49589622..49592769,5 | K562 | blood: | |
| 3 | chr6:49587242..49589421-chr6:49814450..49816259,2 | K562 | blood: | |
| 4 | chr6:49586668..49589143-chr6:49589622..49592521,3 | K562 | blood: | |
| 5 | chr6:49587999..49589701-chr6:49633263..49634892,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000112077 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10080998 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1009099 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1268282 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1268285 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1570064 | 0.94[EUR][1000 genomes] |
| rs2180722 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2518102 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2753077 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs471198 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6458710 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6458714 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6918385 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6925215 | 0.94[EUR][1000 genomes] |
| rs6941167 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs802069 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9369912 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024959 | chr6:49290141-49652124 | Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv1021136 | chr6:49295037-49631278 | Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 4 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:49588000-49590600 | Strong transcription | K562 | blood |
