Variant report

Variant	rs1977397
Chromosome Location	chr13:92706142-92706143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11070009	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1571065	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1977398	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2182499	0.84[EUR][1000 genomes]
rs6492571	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7325647	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7325691	0.86[EUR][1000 genomes]
rs7327060	0.86[EUR][1000 genomes]
rs7327242	0.86[EUR][1000 genomes]
rs7327753	0.85[EUR][1000 genomes]
rs7490573	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs764586	0.82[EUR][1000 genomes]
rs9301771	0.84[EUR][1000 genomes]
rs9301774	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9560904	0.86[EUR][1000 genomes]
rs9583992	0.84[EUR][1000 genomes]
rs9589409	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv562722	chr13:92607374-92733984	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv900887	chr13:92651148-92745416	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv900888	chr13:92651148-92748938	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv900889	chr13:92651148-92772499	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv900890	chr13:92651148-92808689	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1049238	chr13:92667284-92717880	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv900891	chr13:92668623-92757118	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv900892	chr13:92671868-92745416	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv900893	chr13:92671868-92748938	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv900894	chr13:92671868-92772499	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv900895	chr13:92694069-92745416	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv900896	chr13:92694069-92747114	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv900897	chr13:92694069-92748938	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	nsv900898	chr13:92705979-92748938	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv900899	chr13:92705979-92779664	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv900900	chr13:92705979-92787844	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92705400-92707600	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr13:92706000-92707600	Enhancers	HepG2	liver

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