Variant report

Variant	rs2182499
Chromosome Location	chr13:92727286-92727287
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:92598658..92599490-chr13:92726652..92727595,3	MCF-7	breast:

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs11070009	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1326509	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1359669	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs1411742	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411744	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536368	0.82[CEU][hapmap]
rs1547656	0.85[CEU][hapmap]
rs1571065	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1571066	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1831011	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1887115	0.92[CEU][hapmap]
rs1887116	0.89[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs1926492	1.00[ASN][1000 genomes]
rs1977397	0.84[EUR][1000 genomes]
rs1977398	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1977399	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1977400	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1998872	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1998873	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2104519	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2148446	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2352486	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2352487	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2882954	0.88[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap]
rs4126972	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4773661	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4773666	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6492571	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6492575	0.88[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs6492576	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs6492579	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs6492581	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6492582	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6492583	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6492584	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7321234	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7322610	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7325647	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7327242	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs7327753	0.84[CEU][hapmap];0.81[CHB][hapmap]
rs7331302	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs7490573	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs764586	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs7983229	0.90[CEU][hapmap]
rs7983259	0.87[CEU][hapmap]
rs7983268	0.88[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs7985171	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap]
rs7986010	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7986569	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7986588	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7986709	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7987342	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs7988216	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7989318	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7989961	0.88[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap]
rs7990662	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7992170	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7993328	0.80[CEU][hapmap];0.90[CHB][hapmap]
rs7993910	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7993987	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7994471	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7994808	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996100	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7997002	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002251	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9301772	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs9301773	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs9301774	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9301779	0.83[CEU][hapmap]
rs943243	0.87[CEU][hapmap]
rs9516008	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9516013	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9523489	0.80[JPT][hapmap]
rs9523493	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9523495	0.87[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs9523496	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9523498	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9523501	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9523505	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9523508	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9556141	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs9556146	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9556148	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9556150	0.81[CEU][hapmap]
rs9560900	0.92[CEU][hapmap]
rs9560901	0.92[CEU][hapmap]
rs9560903	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs9560918	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9560919	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9560923	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9589411	0.81[CEU][hapmap];0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv562722	chr13:92607374-92733984	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv900887	chr13:92651148-92745416	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv900888	chr13:92651148-92748938	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv900889	chr13:92651148-92772499	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv900890	chr13:92651148-92808689	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv900891	chr13:92668623-92757118	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv900892	chr13:92671868-92745416	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv900893	chr13:92671868-92748938	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv900894	chr13:92671868-92772499	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv900895	chr13:92694069-92745416	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv900896	chr13:92694069-92747114	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv900897	chr13:92694069-92748938	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv900898	chr13:92705979-92748938	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv900899	chr13:92705979-92779664	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv900900	chr13:92705979-92787844	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv562724	chr13:92717730-92745416	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv562725	chr13:92717730-92747114	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92727000-92727600	Enhancers	Fetal Lung	lung

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