Variant report

Variant	rs1998873
Chromosome Location	chr13:92756033-92756034
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1326509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1359669	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs1411742	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1411744	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1571066	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1831011	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1887115	0.92[CEU][hapmap]
rs1887116	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1926492	0.97[ASN][1000 genomes]
rs1977398	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1977399	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1977400	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1998872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2104519	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2148446	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2182499	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2352486	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2352487	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2882954	0.88[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs4126972	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4773661	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4773666	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6492575	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs6492576	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6492579	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6492581	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6492582	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6492583	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6492584	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7321234	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7322610	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7327242	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs7327753	0.81[CEU][hapmap];0.85[CHB][hapmap]
rs7331302	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs764586	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs7983229	0.91[CEU][hapmap]
rs7983268	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7985171	0.83[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs7986010	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7986569	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7986588	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7986709	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7987342	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs7988216	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7989318	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7989961	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7990662	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7992170	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7993328	0.81[CEU][hapmap];0.85[CHB][hapmap]
rs7993910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7993987	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7994471	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7994808	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7996100	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7997002	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8002251	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9301772	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs9301773	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs9301779	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs943243	0.96[CEU][hapmap]
rs9516008	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9516013	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9523493	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9523495	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9523496	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9523498	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9523501	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9523505	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523508	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523512	0.92[CEU][hapmap]
rs9556141	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs9556146	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9556148	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9556150	0.81[CEU][hapmap]
rs9560903	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs9560918	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9560919	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9560923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9560926	0.80[EUR][1000 genomes]
rs9589411	0.82[CEU][hapmap];0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv900889	chr13:92651148-92772499	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv900890	chr13:92651148-92808689	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv900891	chr13:92668623-92757118	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv900894	chr13:92671868-92772499	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv900899	chr13:92705979-92779664	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv900900	chr13:92705979-92787844	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv900901	chr13:92727985-92772499	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92754200-92756200	Enhancers	Ovary	ovary
2	chr13:92754200-92757200	Enhancers	Fetal Lung	lung
3	chr13:92755000-92756600	Enhancers	Fetal Kidney	kidney
4	chr13:92755200-92756400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:92755200-92756400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr13:92755600-92756400	Enhancers	Fetal Heart	heart
7	chr13:92755800-92756200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr13:92755800-92756400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr13:92755800-92756400	Enhancers	Colon Smooth Muscle	Colon
10	chr13:92755800-92756400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr13:92755800-92756600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr13:92755800-92756600	Enhancers	Fetal Intestine Large	intestine
13	chr13:92755800-92756600	Enhancers	Fetal Stomach	stomach
14	chr13:92755800-92757800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr13:92756000-92756600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr13:92756000-92756600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr13:92756000-92756600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr13:92756000-92756600	Enhancers	Fetal Intestine Small	intestine
19	chr13:92756000-92756600	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links