Variant report

Variant	rs9556141
Chromosome Location	chr13:92699157-92699158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs11070009	0.86[EUR][1000 genomes]
rs11839178	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12869256	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1326509	0.81[CEU][hapmap];0.86[CHB][hapmap];0.82[GIH][hapmap]
rs1359669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1411516	0.81[CHB][hapmap]
rs1411517	0.81[CHB][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap]
rs1411742	0.92[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap]
rs1411744	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs1536368	0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1536369	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1547656	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1571065	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1571066	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs1831011	0.86[CHB][hapmap];0.82[GIH][hapmap]
rs1887115	0.91[CEU][hapmap]
rs1887116	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs1926489	0.81[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs1977397	0.86[EUR][1000 genomes]
rs1977398	0.92[CEU][hapmap];0.85[CHB][hapmap];0.89[GIH][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1977399	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs1977400	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs1998872	0.83[CEU][hapmap];0.85[CHB][hapmap]
rs1998873	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs2065194	0.81[CHB][hapmap]
rs2104519	0.81[CEU][hapmap];0.85[CHB][hapmap]
rs2148446	0.81[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap]
rs2182499	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs2352486	0.91[CEU][hapmap];0.85[CHB][hapmap]
rs2352487	0.81[CEU][hapmap];0.85[CHB][hapmap]
rs2882954	0.92[CEU][hapmap];0.80[CHB][hapmap];0.83[CHD][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap]
rs4126972	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs4773657	0.83[CHB][hapmap];0.90[GIH][hapmap]
rs4773661	0.81[CEU][hapmap];0.86[CHB][hapmap];0.80[CHD][hapmap];0.89[GIH][hapmap]
rs4773666	0.81[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap]
rs6492567	0.81[CHB][hapmap]
rs6492571	0.89[EUR][1000 genomes]
rs6492575	0.91[CEU][hapmap];0.84[CHB][hapmap]
rs6492576	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs6492579	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs6492581	0.84[CHB][hapmap]
rs6492582	0.92[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.84[TSI][hapmap]
rs6492583	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs6492584	0.92[CEU][hapmap];0.90[CHB][hapmap]
rs7321234	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs7322610	0.81[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];0.89[GIH][hapmap]
rs7325647	0.88[EUR][1000 genomes]
rs7325691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327753	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7331302	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap]
rs7335849	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7490573	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs764586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7982480	0.81[CHB][hapmap]
rs7983229	0.95[CEU][hapmap]
rs7983259	0.84[CEU][hapmap];0.85[CHB][hapmap]
rs7983268	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs7985171	0.85[CHB][hapmap]
rs7985989	0.92[ASN][1000 genomes]
rs7986010	0.92[CEU][hapmap];0.86[CHB][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap]
rs7986569	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs7986588	0.81[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap]
rs7986596	0.81[CHB][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap]
rs7986709	0.81[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap]
rs7987342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs7988216	0.92[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap]
rs7989318	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs7989697	0.81[CHB][hapmap]
rs7989961	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs7990662	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs7992170	0.81[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap]
rs7993328	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap]
rs7993910	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs7993987	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs7994471	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs7996100	0.92[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap]
rs7997002	0.88[CEU][hapmap];0.85[CHB][hapmap];0.80[CHD][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap]
rs8002251	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs9301765	0.81[CHB][hapmap]
rs9301771	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9301772	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs9301773	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap]
rs9301774	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs943243	0.91[CEU][hapmap]
rs9515998	0.80[CHB][hapmap]
rs9516008	0.83[CEU][hapmap];0.86[CHB][hapmap];0.80[CHD][hapmap];0.86[GIH][hapmap]
rs9516013	0.81[CEU][hapmap];0.90[CHB][hapmap]
rs9523458	0.81[CHB][hapmap];0.90[GIH][hapmap]
rs9523466	0.81[CHB][hapmap]
rs9523474	0.81[CHB][hapmap]
rs9523482	0.88[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9523493	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs9523495	0.91[CEU][hapmap];0.83[CHB][hapmap]
rs9523496	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs9523498	0.92[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap]
rs9523501	0.81[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap]
rs9523505	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs9523508	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs9556140	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9556146	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs9556148	0.81[CEU][hapmap];0.86[CHB][hapmap];0.80[CHD][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap]
rs9560895	0.80[CHB][hapmap]
rs9560898	0.86[CHB][hapmap];0.83[CHD][hapmap]
rs9560900	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs9560901	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9560903	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap]
rs9560904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9560918	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs9560919	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs9560923	0.81[CEU][hapmap];0.86[CHB][hapmap];0.82[GIH][hapmap]
rs9583992	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9589409	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9589411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv562722	chr13:92607374-92733984	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv900887	chr13:92651148-92745416	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv900888	chr13:92651148-92748938	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv900889	chr13:92651148-92772499	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv900890	chr13:92651148-92808689	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1049238	chr13:92667284-92717880	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv900891	chr13:92668623-92757118	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv900892	chr13:92671868-92745416	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv900893	chr13:92671868-92748938	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv900894	chr13:92671868-92772499	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv900895	chr13:92694069-92745416	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv900896	chr13:92694069-92747114	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv900897	chr13:92694069-92748938	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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