Variant report

Variant	rs9523458
Chromosome Location	chr13:92616117-92616118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1359669	0.81[CHB][hapmap]
rs1411514	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs1411516	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1411517	1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap]
rs1411742	0.83[GIH][hapmap]
rs1536368	0.84[JPT][hapmap]
rs1536369	0.84[JPT][hapmap]
rs1547656	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs1571596	0.95[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap]
rs1819421	0.81[CHD][hapmap]
rs1831011	0.83[GIH][hapmap]
rs1854734	0.90[CHB][hapmap]
rs1926489	0.90[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap]
rs1977398	0.85[GIH][hapmap]
rs2065194	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2148446	0.88[GIH][hapmap]
rs2352192	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs2352195	0.90[CHB][hapmap];0.93[CHD][hapmap]
rs2352197	0.84[ASN][1000 genomes]
rs2352199	0.95[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap]
rs2882954	0.88[GIH][hapmap]
rs4773655	0.95[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs4773656	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs4773657	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap]
rs4773661	0.90[GIH][hapmap]
rs4773666	0.88[GIH][hapmap]
rs6492567	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6492582	0.85[GIH][hapmap]
rs7319605	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7321674	0.95[CHB][hapmap];0.96[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs7322610	0.90[GIH][hapmap]
rs7325116	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs7327242	0.80[CHB][hapmap]
rs7327753	0.82[JPT][hapmap]
rs7331302	0.81[CHB][hapmap];0.93[GIH][hapmap]
rs7332162	0.85[CHB][hapmap]
rs7339088	0.91[ASN][1000 genomes]
rs764586	0.81[CHB][hapmap]
rs7982480	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7983259	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7986010	0.88[GIH][hapmap]
rs7986588	0.88[GIH][hapmap]
rs7986596	1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap]
rs7986709	0.88[GIH][hapmap]
rs7987342	0.81[CHB][hapmap];0.93[GIH][hapmap]
rs7988216	0.88[GIH][hapmap]
rs7989697	0.80[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap]
rs7992170	0.88[GIH][hapmap]
rs7993328	0.93[GIH][hapmap]
rs7996100	0.88[GIH][hapmap]
rs7997002	0.83[GIH][hapmap]
rs9301763	0.85[CHB][hapmap];0.93[CHD][hapmap]
rs9301765	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9301772	0.81[CHB][hapmap];0.93[GIH][hapmap]
rs9301773	0.81[CHB][hapmap];0.93[GIH][hapmap]
rs9515990	0.84[CHD][hapmap]
rs9515994	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9515998	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs9516008	0.87[GIH][hapmap]
rs9523451	0.87[CHD][hapmap]
rs9523453	0.95[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs9523454	0.94[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs9523455	0.95[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs9523466	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523467	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9523472	0.91[ASN][1000 genomes]
rs9523473	0.95[CHB][hapmap]
rs9523474	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523482	0.95[GIH][hapmap]
rs9523498	0.87[GIH][hapmap]
rs9556129	0.84[CHD][hapmap]
rs9556141	0.81[CHB][hapmap];0.90[GIH][hapmap]
rs9556148	0.88[GIH][hapmap]
rs9560895	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9560900	0.84[JPT][hapmap]
rs9560903	0.81[CHB][hapmap];0.93[GIH][hapmap]
rs9589411	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900885	chr13:92561714-92621620	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv900886	chr13:92576149-92626399	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv562722	chr13:92607374-92733984	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9523458	GPC5	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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