Variant report

Variant	rs9523482
Chromosome Location	chr13:92678433-92678434
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11839178	1.00[ASN][1000 genomes]
rs12869256	0.94[ASN][1000 genomes]
rs1359669	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1411517	0.92[GIH][hapmap]
rs1411742	0.87[GIH][hapmap]
rs1536368	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1536369	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1547656	0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap]
rs1831011	0.87[GIH][hapmap];0.89[TSI][hapmap]
rs1926489	0.87[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs1977398	0.90[GIH][hapmap]
rs2148446	0.92[GIH][hapmap];0.89[TSI][hapmap]
rs2882954	0.92[GIH][hapmap]
rs4773657	0.95[GIH][hapmap]
rs4773661	0.95[GIH][hapmap];0.89[TSI][hapmap]
rs4773666	0.92[GIH][hapmap];0.91[TSI][hapmap]
rs6492582	0.90[GIH][hapmap]
rs7322610	0.95[GIH][hapmap];0.89[TSI][hapmap]
rs7325691	0.92[ASN][1000 genomes]
rs7327060	0.92[ASN][1000 genomes]
rs7327242	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7327753	0.88[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs7331302	0.88[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap]
rs7335849	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7339088	0.86[EUR][1000 genomes]
rs764586	0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7985989	1.00[ASN][1000 genomes]
rs7986010	0.92[GIH][hapmap]
rs7986588	0.92[GIH][hapmap];0.86[TSI][hapmap]
rs7986596	0.92[GIH][hapmap]
rs7986709	0.92[GIH][hapmap];0.84[TSI][hapmap]
rs7987342	0.88[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap]
rs7988216	0.92[GIH][hapmap]
rs7989697	0.88[TSI][hapmap]
rs7992170	0.92[GIH][hapmap]
rs7993328	0.81[CHB][hapmap];0.97[GIH][hapmap];0.84[JPT][hapmap]
rs7996100	0.92[GIH][hapmap]
rs7997002	0.87[GIH][hapmap]
rs9301771	0.94[ASN][1000 genomes]
rs9301772	0.88[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap]
rs9301773	0.88[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap]
rs9515998	0.85[EUR][1000 genomes]
rs9516008	0.92[GIH][hapmap];0.89[TSI][hapmap]
rs9523458	0.95[GIH][hapmap]
rs9523467	0.84[EUR][1000 genomes]
rs9523472	0.85[EUR][1000 genomes]
rs9523498	0.92[GIH][hapmap]
rs9523501	0.91[TSI][hapmap]
rs9556140	1.00[ASN][1000 genomes]
rs9556141	0.88[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap]
rs9556148	0.92[GIH][hapmap]
rs9560898	0.94[CHB][hapmap];0.89[CHD][hapmap]
rs9560900	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9560901	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9560903	0.88[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap]
rs9560904	0.92[ASN][1000 genomes]
rs9583992	0.94[ASN][1000 genomes]
rs9589409	0.98[ASN][1000 genomes]
rs9589411	0.88[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv562722	chr13:92607374-92733984	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv900887	chr13:92651148-92745416	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv900888	chr13:92651148-92748938	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv900889	chr13:92651148-92772499	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv900890	chr13:92651148-92808689	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1049238	chr13:92667284-92717880	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv900891	chr13:92668623-92757118	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv900892	chr13:92671868-92745416	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv900893	chr13:92671868-92748938	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv900894	chr13:92671868-92772499	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92677800-92680600	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links