Variant report

Variant	rs9515998
Chromosome Location	chr13:92646630-92646631
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1359669	0.81[CHB][hapmap]
rs1411514	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs1411516	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1411517	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1536368	0.80[CHB][hapmap];0.85[EUR][1000 genomes]
rs1536369	0.80[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1547656	0.85[CHB][hapmap]
rs1571596	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs1854734	0.89[CHB][hapmap]
rs1926489	0.90[CHB][hapmap];0.90[YRI][hapmap]
rs2065194	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2352192	0.85[CHB][hapmap];0.91[YRI][hapmap]
rs2352195	0.90[CHB][hapmap]
rs2352199	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs4773655	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs4773656	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs4773657	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap]
rs6492567	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7319605	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs7321674	0.95[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs7325116	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs7327242	0.81[CHB][hapmap]
rs7327753	0.80[CHB][hapmap]
rs7331302	0.80[CHB][hapmap]
rs7332162	0.85[CHB][hapmap]
rs7335849	0.80[CHB][hapmap]
rs7339088	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs764586	0.81[CHB][hapmap]
rs7982480	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7983259	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7986596	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7987342	0.80[CHB][hapmap]
rs7989697	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9301763	0.85[CHB][hapmap]
rs9301765	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9301772	0.80[CHB][hapmap]
rs9301773	0.80[CHB][hapmap]
rs9515994	0.84[ASN][1000 genomes]
rs9523453	0.95[CHB][hapmap];0.83[JPT][hapmap];0.91[YRI][hapmap]
rs9523454	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs9523455	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs9523458	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9523466	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9523467	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9523472	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523473	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs9523474	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs9523482	0.85[EUR][1000 genomes]
rs9556141	0.80[CHB][hapmap]
rs9560895	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs9560900	0.80[CHB][hapmap]
rs9560901	0.80[CHB][hapmap]
rs9560903	0.80[CHB][hapmap]
rs9589411	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv562722	chr13:92607374-92733984	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92645400-92647000	Enhancers	Brain Substantia Nigra	brain
2	chr13:92645800-92648400	Enhancers	Brain Cingulate Gyrus	brain
3	chr13:92646400-92647000	Enhancers	Brain Hippocampus Middle	brain
4	chr13:92646400-92647000	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr13:92646600-92647800	Enhancers	Brain Anterior Caudate	brain

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