Variant report

Variant	rs1411516
Chromosome Location	chr13:92610004-92610005
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1359669	0.81[CHB][hapmap]
rs1411514	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs1411517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1536368	0.80[CHB][hapmap]
rs1536369	0.80[CHB][hapmap]
rs1547656	0.85[CHB][hapmap]
rs1571596	0.95[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap]
rs1854734	0.90[CHB][hapmap]
rs1926489	0.90[CHB][hapmap]
rs2065194	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2352192	0.85[CHB][hapmap]
rs2352195	0.90[CHB][hapmap]
rs2352197	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2352199	0.95[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap]
rs4773655	0.95[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs4773656	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs4773657	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6492567	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7319605	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7321674	0.95[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7325116	0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap]
rs7327242	0.81[CHB][hapmap]
rs7327753	0.80[CHB][hapmap]
rs7331302	0.81[CHB][hapmap]
rs7332162	0.85[CHB][hapmap]
rs7335849	0.80[CHB][hapmap]
rs7339088	0.90[ASN][1000 genomes]
rs764586	0.81[CHB][hapmap]
rs7982480	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs7983259	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs7986596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7987342	0.81[CHB][hapmap]
rs7989697	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9301763	0.85[CHB][hapmap]
rs9301765	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9301769	0.88[YRI][hapmap]
rs9301772	0.81[CHB][hapmap]
rs9301773	0.81[CHB][hapmap]
rs9515994	0.92[ASN][1000 genomes]
rs9515998	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs9523453	0.95[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs9523454	0.95[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs9523455	0.95[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9523458	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523466	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9523467	0.91[ASN][1000 genomes]
rs9523472	0.90[ASN][1000 genomes]
rs9523473	0.95[CHB][hapmap]
rs9523474	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9556141	0.81[CHB][hapmap]
rs9560895	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9560900	0.80[CHB][hapmap]
rs9560901	0.80[CHB][hapmap]
rs9560903	0.81[CHB][hapmap]
rs9589411	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900885	chr13:92561714-92621620	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv900886	chr13:92576149-92626399	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv562722	chr13:92607374-92733984	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links