Variant report

Variant	rs9523455
Chromosome Location	chr13:92600073-92600074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1411514	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1411516	0.95[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap]
rs1411517	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap]
rs1571596	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs1819421	0.84[CHD][hapmap];0.83[MEX][hapmap]
rs1854734	0.95[CHB][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap]
rs1854735	0.84[EUR][1000 genomes]
rs1926489	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs2065194	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2352192	0.90[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap]
rs2352193	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2352195	0.81[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs2352197	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2352199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs4773655	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[ASN][1000 genomes]
rs4773656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs4773657	0.94[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap]
rs6492567	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs7319605	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7321674	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7325116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs7327753	0.81[JPT][hapmap]
rs7332162	0.90[CHB][hapmap]
rs7982480	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs7983259	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs7986596	0.81[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap]
rs7989697	0.95[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap]
rs871490	0.81[CHB][hapmap];0.80[GIH][hapmap]
rs9301763	0.90[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap]
rs9301765	0.95[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap]
rs9515990	0.85[CHD][hapmap];0.83[GIH][hapmap]
rs9515994	0.96[ASN][1000 genomes]
rs9515998	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs9523451	0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap]
rs9523453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9523454	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9523458	0.95[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap]
rs9523466	0.95[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap]
rs9523467	0.81[ASN][1000 genomes]
rs9523473	0.90[CHB][hapmap]
rs9523474	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs9556129	0.88[CHD][hapmap];0.84[EUR][1000 genomes]
rs9560895	0.95[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900883	chr13:92481236-92602622	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900885	chr13:92561714-92621620	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv528318	chr13:92575622-92607374	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv900886	chr13:92576149-92626399	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9523455	GPC5	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92599200-92602400	Weak transcription	Fetal Brain Male	brain
2	chr13:92599800-92601200	Weak transcription	Fetal Brain Female	brain

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