Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1330472	0.81[CHD][hapmap]
rs1411517	0.84[CHD][hapmap]
rs1571596	0.84[CHD][hapmap];0.83[MEX][hapmap]
rs1854734	0.83[MEX][hapmap]
rs1854735	0.98[ASN][1000 genomes]
rs2352192	0.90[CHB][hapmap];0.84[CHD][hapmap]
rs2352193	0.84[ASN][1000 genomes]
rs2352195	0.85[CHB][hapmap];0.87[CHD][hapmap];0.80[JPT][hapmap];0.83[MEX][hapmap]
rs2352197	0.81[ASN][1000 genomes]
rs2352199	0.83[MEX][hapmap]
rs4773655	0.84[CHD][hapmap];0.83[MEX][hapmap];0.81[ASN][1000 genomes]
rs4773657	0.87[CHD][hapmap]
rs7318425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs7321674	0.84[CHD][hapmap];0.83[MEX][hapmap]
rs7332162	0.80[JPT][hapmap]
rs7986596	0.84[CHD][hapmap]
rs7989697	0.84[CHD][hapmap]
rs9301758	0.95[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs9301763	0.80[CHB][hapmap];0.87[CHD][hapmap];0.83[MEX][hapmap]
rs9515990	0.95[CHB][hapmap];0.81[CHD][hapmap];0.92[MEX][hapmap]
rs9523451	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap]
rs9523453	0.81[ASN][1000 genomes]
rs9523455	0.84[CHD][hapmap];0.83[MEX][hapmap]
rs9523458	0.81[CHD][hapmap]
rs9556129	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9556131	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900883	chr13:92481236-92602622	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv976142	chr13:92492782-92567759	Weak transcription Enhancers Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv900884	chr13:92548841-92595572	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv916705	chr13:92549110-92575114	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	nsv983613	chr13:92550026-92567759	Active TSS Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
7	nsv900885	chr13:92561714-92621620	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1819421	GPC5	cis	cerebellum	SCAN
rs1819421	GPC6	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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