Variant report

Variant	rs7318425
Chromosome Location	chr13:92568534-92568535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1819421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1854735	0.94[ASN][1000 genomes]
rs2352192	0.90[CHB][hapmap]
rs2352193	0.86[ASN][1000 genomes]
rs2352195	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs2352197	0.82[ASN][1000 genomes]
rs4773655	0.82[ASN][1000 genomes]
rs7332162	0.81[JPT][hapmap]
rs9301758	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9301763	0.80[CHB][hapmap]
rs9515990	0.95[CHB][hapmap]
rs9523451	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs9523453	0.82[ASN][1000 genomes]
rs9556129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9556131	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900883	chr13:92481236-92602622	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900884	chr13:92548841-92595572	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
4	nsv916705	chr13:92549110-92575114	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv900885	chr13:92561714-92621620	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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