Variant report

Variant	rs2352192
Chromosome Location	chr13:92575181-92575182
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1411514	0.88[CEU][hapmap];0.90[CHB][hapmap]
rs1411516	0.85[CHB][hapmap]
rs1411517	0.85[CHB][hapmap];0.93[CHD][hapmap]
rs1571596	0.90[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap]
rs1819421	0.90[CHB][hapmap];0.84[CHD][hapmap]
rs1854734	0.96[CEU][hapmap];0.84[CHB][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs1854735	0.86[ASN][1000 genomes]
rs1926489	0.82[LWK][hapmap];0.82[YRI][hapmap]
rs2065194	0.85[CHB][hapmap]
rs2352193	0.96[ASN][1000 genomes]
rs2352195	0.88[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs2352197	0.92[ASN][1000 genomes]
rs2352199	0.90[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap]
rs4773655	0.84[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4773656	0.90[CHB][hapmap]
rs4773657	1.00[ASW][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];0.91[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.82[YRI][hapmap]
rs6492567	0.85[CHB][hapmap]
rs7318425	0.90[CHB][hapmap]
rs7319605	0.90[CHB][hapmap]
rs7321674	0.90[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap];0.85[ASN][1000 genomes]
rs7325116	0.90[CHB][hapmap]
rs7332162	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs7982480	0.85[CHB][hapmap]
rs7986596	0.85[CHB][hapmap];0.93[CHD][hapmap]
rs7989697	0.85[CHB][hapmap];0.93[CHD][hapmap]
rs871490	0.85[TSI][hapmap]
rs9301758	0.85[CHB][hapmap]
rs9301763	0.96[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs9301765	0.85[CHB][hapmap]
rs9515990	0.85[CHB][hapmap];0.84[CHD][hapmap];0.80[JPT][hapmap]
rs9515994	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9515998	0.85[CHB][hapmap];0.91[YRI][hapmap]
rs9523451	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs9523453	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9523454	0.89[CHB][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9523455	0.90[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.86[ASN][1000 genomes]
rs9523458	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs9523466	0.85[CHB][hapmap]
rs9523474	0.85[CHB][hapmap];0.91[YRI][hapmap]
rs9556129	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[ASN][1000 genomes]
rs9556131	0.85[CHB][hapmap]
rs9560895	0.84[CHB][hapmap];0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900883	chr13:92481236-92602622	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900884	chr13:92548841-92595572	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
4	nsv900885	chr13:92561714-92621620	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2352192	GPC6	cis	cerebellum	SCAN
rs2352192	GPC5	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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