Variant report

Variant	rs4773655
Chromosome Location	chr13:92586884-92586885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1411514	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1411516	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs1411517	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap]
rs1571596	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs1819421	0.84[CHD][hapmap];0.83[MEX][hapmap]
rs1854734	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs1926489	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs2065194	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2352192	0.84[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs2352193	0.90[ASN][1000 genomes]
rs2352195	0.88[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs2352197	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2352199	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs4773656	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4773657	0.94[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap]
rs6492567	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs7319605	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7321674	1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7325116	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7327753	0.81[JPT][hapmap]
rs7332162	0.88[CEU][hapmap];0.90[CHB][hapmap]
rs7982480	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs7983259	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs7986596	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap]
rs7989697	0.95[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap]
rs871490	0.81[CHB][hapmap];0.80[GIH][hapmap];0.81[TSI][hapmap]
rs9301763	0.88[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs9301765	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs9515990	0.85[CHD][hapmap];0.83[GIH][hapmap]
rs9515994	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9515998	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs9523451	0.88[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs9523453	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523454	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9523455	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[ASN][1000 genomes]
rs9523458	0.95[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap]
rs9523466	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs9523473	0.89[CHB][hapmap]
rs9523474	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs9556129	0.88[CHD][hapmap]
rs9560895	0.95[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900883	chr13:92481236-92602622	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900884	chr13:92548841-92595572	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
4	nsv900885	chr13:92561714-92621620	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv528318	chr13:92575622-92607374	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv900886	chr13:92576149-92626399	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv10926	chr13:92577389-92586920	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
8	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4773655	GPC6	cis	cerebellum	SCAN
rs4773655	GPC5	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92585600-92587400	Enhancers	Fetal Lung	lung
2	chr13:92585800-92587000	Enhancers	Fetal Kidney	kidney
3	chr13:92586600-92587200	Enhancers	Ovary	ovary
4	chr13:92586800-92587200	Enhancers	Fetal Heart	heart

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