Variant report

Variant	rs7983259
Chromosome Location	chr13:92665981-92665982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11839178	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12869256	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1359669	0.85[CEU][hapmap];0.85[CHB][hapmap]
rs1411514	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs1411516	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1411517	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1536368	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs1536369	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs1547656	0.81[CEU][hapmap];0.89[CHB][hapmap]
rs1571596	0.89[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap]
rs1854734	0.84[CHB][hapmap]
rs1926489	0.95[CHB][hapmap]
rs2065194	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2182499	0.87[CEU][hapmap]
rs2352195	0.84[CHB][hapmap]
rs2352199	0.89[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap]
rs4773655	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs4773656	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs4773657	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6492567	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7319605	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7321674	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs7325116	0.89[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap]
rs7325691	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7327060	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7327242	0.85[CEU][hapmap];0.85[CHB][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7327753	0.88[CEU][hapmap];0.85[CHB][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7331302	0.84[CEU][hapmap];0.85[CHB][hapmap]
rs7335849	0.84[CHB][hapmap]
rs7339088	0.91[ASN][1000 genomes]
rs764586	0.85[CEU][hapmap];0.85[CHB][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7982480	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs7983229	0.81[CEU][hapmap]
rs7985171	0.86[CEU][hapmap]
rs7986596	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs7987342	0.84[CEU][hapmap];0.85[CHB][hapmap]
rs7989697	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7992170	0.87[CEU][hapmap]
rs7993328	0.84[CEU][hapmap]
rs9301765	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs9301769	0.94[YRI][hapmap]
rs9301771	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9301772	0.84[CEU][hapmap];0.85[CHB][hapmap]
rs9301773	0.84[CEU][hapmap];0.85[CHB][hapmap]
rs9515998	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs9523453	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs9523454	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs9523455	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs9523458	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9523466	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9523467	0.90[ASN][1000 genomes]
rs9523472	0.91[ASN][1000 genomes]
rs9523473	0.89[CHB][hapmap]
rs9523474	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9523495	0.82[CHB][hapmap]
rs9556140	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9556141	0.84[CEU][hapmap];0.85[CHB][hapmap]
rs9556146	0.88[CEU][hapmap]
rs9556148	0.87[CEU][hapmap]
rs9560895	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9560900	0.96[CEU][hapmap];0.84[CHB][hapmap];0.80[JPT][hapmap]
rs9560901	0.96[CEU][hapmap];0.84[CHB][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9560903	0.84[CEU][hapmap];0.85[CHB][hapmap]
rs9560904	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9560919	0.88[CEU][hapmap]
rs9583992	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9589409	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9589411	0.85[CEU][hapmap];0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv562722	chr13:92607374-92733984	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv900887	chr13:92651148-92745416	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv900888	chr13:92651148-92748938	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv900889	chr13:92651148-92772499	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv900890	chr13:92651148-92808689	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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