Variant report

Variant	rs9301769
Chromosome Location	chr13:92641545-92641546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11839178	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12869256	0.83[EUR][1000 genomes]
rs1411516	0.88[YRI][hapmap]
rs1411517	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs1571596	0.82[YRI][hapmap]
rs7321674	0.81[ASN][1000 genomes]
rs7339088	1.00[ASN][1000 genomes]
rs7982480	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs7983259	0.94[YRI][hapmap]
rs7986596	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs9301765	0.90[CEU][hapmap];0.88[YRI][hapmap]
rs9515994	0.84[ASN][1000 genomes]
rs9515998	1.00[ASN][1000 genomes]
rs9523466	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs9523467	0.98[ASN][1000 genomes]
rs9523472	1.00[ASN][1000 genomes]
rs9523473	0.84[ASN][1000 genomes]
rs9556140	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9560901	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv562722	chr13:92607374-92733984	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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