Variant report

Variant	rs9560901
Chromosome Location	chr13:92678099-92678100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs11070009	0.80[EUR][1000 genomes]
rs11839178	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12869256	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1359669	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1411516	0.80[CHB][hapmap]
rs1411742	0.81[CEU][hapmap]
rs1411744	0.81[CEU][hapmap]
rs1536368	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs1536369	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs1547656	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1571065	0.81[EUR][1000 genomes]
rs1571066	0.81[CEU][hapmap]
rs1887115	0.83[CEU][hapmap]
rs1887116	0.81[CEU][hapmap]
rs1926489	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1977398	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs1977399	0.81[CEU][hapmap]
rs1977400	0.81[CEU][hapmap]
rs1998872	0.82[CEU][hapmap]
rs2065194	0.80[CHB][hapmap]
rs2182499	0.92[CEU][hapmap]
rs2352486	0.84[CEU][hapmap]
rs2882954	0.81[CEU][hapmap]
rs4126972	0.81[CEU][hapmap]
rs4773657	0.83[CHB][hapmap]
rs6492567	0.80[CHB][hapmap]
rs6492571	0.80[EUR][1000 genomes]
rs6492576	0.81[CEU][hapmap]
rs6492579	0.81[CEU][hapmap]
rs6492582	0.81[CEU][hapmap]
rs6492583	0.81[CEU][hapmap]
rs6492584	0.81[CEU][hapmap]
rs7321234	0.81[CEU][hapmap]
rs7325647	0.82[EUR][1000 genomes]
rs7325691	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7327060	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7327242	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7327753	0.92[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7331302	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7335849	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7490573	0.81[EUR][1000 genomes]
rs764586	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7982480	0.80[CHB][hapmap]
rs7983229	0.86[CEU][hapmap]
rs7983259	0.96[CEU][hapmap];0.84[CHB][hapmap]
rs7983268	0.81[CEU][hapmap]
rs7985171	0.91[CEU][hapmap]
rs7985989	1.00[ASN][1000 genomes]
rs7986010	0.81[CEU][hapmap]
rs7986569	0.81[CEU][hapmap]
rs7987342	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7988216	0.81[CEU][hapmap]
rs7989318	0.81[CEU][hapmap]
rs7989961	0.84[CEU][hapmap]
rs7992170	0.92[CEU][hapmap]
rs7993328	0.88[CEU][hapmap];0.84[JPT][hapmap]
rs7993987	0.81[CEU][hapmap]
rs7996100	0.81[CEU][hapmap]
rs8002251	0.81[CEU][hapmap]
rs9301765	0.80[CHB][hapmap]
rs9301771	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9301772	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9301773	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9301774	0.81[EUR][1000 genomes]
rs9515998	0.80[CHB][hapmap]
rs9523466	0.80[CHB][hapmap]
rs9523474	0.80[CHB][hapmap]
rs9523482	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9523493	0.81[CEU][hapmap]
rs9523496	0.81[CEU][hapmap]
rs9523498	0.83[CEU][hapmap]
rs9523508	0.81[CEU][hapmap]
rs9556140	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556141	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9556146	0.92[CEU][hapmap]
rs9556148	0.92[CEU][hapmap]
rs9560898	0.95[CHB][hapmap]
rs9560900	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9560903	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9560904	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9560919	0.92[CEU][hapmap]
rs9583992	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9589409	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9589411	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv562722	chr13:92607374-92733984	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv900887	chr13:92651148-92745416	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv900888	chr13:92651148-92748938	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv900889	chr13:92651148-92772499	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv900890	chr13:92651148-92808689	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1049238	chr13:92667284-92717880	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv900891	chr13:92668623-92757118	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv900892	chr13:92671868-92745416	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv900893	chr13:92671868-92748938	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv900894	chr13:92671868-92772499	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92677800-92680600	Enhancers	Fetal Lung	lung

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