Variant report

Variant	rs1977400
Chromosome Location	chr13:92720114-92720115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs11070009	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1326509	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1359669	0.93[CEU][hapmap];0.86[CHB][hapmap]
rs1411742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1411744	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1536369	0.83[CEU][hapmap]
rs1571065	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1571066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs1831011	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1887115	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs1887116	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs1926489	0.81[CEU][hapmap]
rs1926492	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1977397	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1977398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1977399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1998872	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1998873	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2104519	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2148446	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2182499	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2352486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs2352487	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs2882954	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap]
rs4126972	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4773661	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4773666	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6492571	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6492575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6492576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6492579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs6492581	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6492582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6492583	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6492584	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7321234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7322610	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7325647	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7325691	0.81[EUR][1000 genomes]
rs7327060	0.81[EUR][1000 genomes]
rs7327242	0.93[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs7327753	0.92[CEU][hapmap];0.85[CHB][hapmap];0.80[EUR][1000 genomes]
rs7331302	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs7335849	0.83[CEU][hapmap]
rs7490573	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs764586	0.93[CEU][hapmap];0.86[CHB][hapmap]
rs7983229	1.00[CEU][hapmap]
rs7983268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs7985171	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7986010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7986569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7986588	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs7986709	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7987342	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs7988216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs7989318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs7989961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs7990662	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7992170	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7993328	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs7993910	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7993987	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7994471	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7994808	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7996100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs7997002	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8002251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9301772	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs9301773	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs9301774	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs943243	1.00[CEU][hapmap]
rs9516008	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9516013	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs9523489	0.87[JPT][hapmap]
rs9523493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs9523495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs9523498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523501	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523505	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9523508	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9523512	0.81[CEU][hapmap]
rs9556141	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs9556146	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9556148	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9560900	0.81[CEU][hapmap]
rs9560901	0.81[CEU][hapmap]
rs9560903	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs9560904	0.81[EUR][1000 genomes]
rs9560918	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs9560919	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9560923	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9589411	0.93[CEU][hapmap];0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv562722	chr13:92607374-92733984	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv900887	chr13:92651148-92745416	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv900888	chr13:92651148-92748938	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv900889	chr13:92651148-92772499	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv900890	chr13:92651148-92808689	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv900891	chr13:92668623-92757118	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv900892	chr13:92671868-92745416	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv900893	chr13:92671868-92748938	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv900894	chr13:92671868-92772499	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv900895	chr13:92694069-92745416	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv900896	chr13:92694069-92747114	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv900897	chr13:92694069-92748938	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv900898	chr13:92705979-92748938	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv900899	chr13:92705979-92779664	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv900900	chr13:92705979-92787844	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv562724	chr13:92717730-92745416	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv562725	chr13:92717730-92747114	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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